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PDBsum entry 6ipc

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 6ipc calculated with MOLE 2.0 PDB id
6ipc
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.32 18.2 -2.83 -0.57 17.6 86 2 0 5 1 0 0 0  
2 2.08 2.20 22.1 -1.80 -0.31 28.4 81 3 2 2 3 1 0 0  
3 1.40 1.42 15.2 -1.60 -0.52 19.0 76 1 1 2 1 1 1 0  
4 1.41 1.44 15.5 -1.43 -0.54 17.6 84 1 1 2 1 0 1 0  
5 1.25 1.59 22.1 -0.27 0.03 15.7 73 2 1 0 4 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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