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PDBsum entry 6id1

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Top Page protein dna_rna ligands metals Protein-protein interface(s) links
Splicing PDB id
6id1
Contents
Protein chains
1981 a.a.
888 a.a.
303 a.a.
568 a.a.
475 a.a.
130 a.a.
143 a.a.
290 a.a.
118 a.a.
272 a.a.
159 a.a.
317 a.a.
158 a.a.
347 a.a.
81 a.a.
86 a.a.
82 a.a.
97 a.a.
74 a.a.
79 a.a.
74 a.a.
132 a.a.
67 a.a.
152 a.a.
576 a.a.
1322 a.a.
79 a.a.
85 a.a.
67 a.a.
162 a.a.
94 a.a.
663 a.a.
DNA/RNA
Ligands
IHP
GTP
Metals
_MG ×7
_ZN ×7
procheck   Generate full PROCHECK analyses

PROCHECK summary for 6id1

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]         7669       86.5%*  
Additional allowed regions [a,b,l,p]       1124       12.7%          
Generously allowed regions [~a,~b,~l,~p]     58        0.7%          
Disallowed regions         [XX]              20        0.2%*  
                                           ----      ------
Non-glycine and non-proline residues       8871      100.0%

End-residues (excl. Gly and Pro)            176

Glycine residues                            488
Proline residues                            467
                                           ----
Total number of residues                  10002


Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].


2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution            -0.17      
     Chi1-chi2 distribution           0.06      
     Chi1 only                        0.14      
     Chi3 & chi4                      0.53      
     Omega                           -0.45      
                                                  -0.17      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.62      
     Main-chain bond angles           0.39      
                                                   0.48      
                                                  =====

     OVERALL AVERAGE                               0.11      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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