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PDBsum entry 6ibm

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 6ibm calculated with MOLE 2.0 PDB id
6ibm
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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2 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.26 1.46 19.3 -0.55 -0.23 4.6 78 1 0 3 2 2 0 0  EDO 519 A
2 1.29 1.48 20.2 -1.64 -0.61 2.8 70 0 0 4 1 1 2 0  PEG 509 A
3 1.28 1.47 30.8 -1.27 -0.23 3.9 78 1 0 8 2 3 1 0  PEG 509 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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