PDBsum entry 6htt

Tunnel analysis for: 6htt calculated with

MOLE 2.0

PDB id

6htt

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.22

1.23

29.9

-0.63

-0.60

5.5

79

1

2

3

3

2

1

0

DMF 507 B

2

1.24

1.24

31.7

-1.02

-0.45

12.0

74

3

3

1

3

2

2

0

GOL 514 B

3

1.23

1.23

33.7

-1.30

-0.54

15.2

75

3

5

1

3

2

2

0

GOL 514 B

4

1.22

1.22

36.5

-1.38

-0.69

11.0

76

2

3

3

2

2

2

0

GOL 509 A

5

1.23

1.24

36.5

-0.70

-0.20

9.4

74

4

3

1

4

2

2

1

GOL 514 B

6

1.13

1.31

15.9

0.69

0.48

5.5

73

1

1

0

5

2

0

0

7

1.14

1.64

16.1

-1.29

-0.24

13.2

84

1

1

3

2

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.