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PDBsum entry 6hqb

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6hqb calculated with MOLE 2.0 PDB id
6hqb
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.12 5.16 28.1 2.18 1.24 9.7 73 4 0 0 8 6 0 0  CLA 1202 B CLA 1203 B CLA 1210 B CLA 1214 B CLA
1215 B CLA 1225 B BCR 4005 B
2 2.78 3.57 29.2 0.27 0.85 15.3 63 3 0 0 7 4 1 0  CLA 1131 A CLA 1132 A CLA 1022 B CLA 1206 B CLA
1207 B BCR 4018 I EQ3 4020 I
3 3.02 4.28 31.3 1.44 0.80 7.3 69 2 0 1 7 6 1 0  BCR 4012 A CLA 1229 B CLA 1230 B CLA 1235 B CLA
1301 F BCR 4014 F C7Z 4016 F C7Z 4015 J
4 1.20 1.38 33.1 0.00 0.04 7.5 74 2 1 1 4 3 1 1  CLA 1111 A CLA 1112 A CLA 1114 A BCR 4003 A
5 1.75 1.98 45.9 1.39 0.56 3.8 78 2 0 3 15 4 0 0  CLA 1106 A CLA 1107 A CLA 1126 A CLA 1140 A BCR
4012 A CLA 1229 B CLA 1230 B 45D 4011 B CLA 1301
F BCR 4014 F
6 2.17 2.30 47.7 -0.07 0.52 19.4 78 4 0 1 10 4 0 0  CLA 1108 A CLA 1110 A CLA 1111 A CLA 1118 A CLA
1120 A BCR 4001 A
7 1.78 2.00 52.5 0.93 0.72 3.6 72 3 0 3 15 5 0 0  CLA 1103 A CLA 1104 A CLA 1106 A CLA 1111 A CLA
1117 A CLA 1126 A CLA 1127 A BCR 4003 A
8 1.14 1.38 55.6 0.40 0.48 10.7 71 5 1 3 12 4 2 0  CLA 1103 A CLA 1104 A CLA 1111 A CLA 1116 A CLA
1117 A CLA 1123 A CLA 1127 A CLA 1128 A BCR 4003 A
9 2.77 3.55 70.2 0.52 0.73 15.3 72 7 0 0 15 7 1 0  CLA 1132 A CLA 1022 B CLA 1201 B CLA 1202 B CLA
1203 B CLA 1206 B CLA 1207 B CLA 1210 B CLA 1224
B CLA 1226 B CLA 1239 B PQN 2002 B BCR 4005 B BCR
4017 B LMG 5002 B BCR 4018 I EQ3 4020 I ECH 4021 M
10 2.78 3.55 71.3 1.38 1.02 8.0 73 6 1 0 16 8 1 0  CLA 1132 A CLA 1022 B CLA 1201 B CLA 1202 B CLA
1203 B CLA 1204 B CLA 1205 B CLA 1206 B CLA 1207
B CLA 1210 B CLA 1215 B CLA 1224 B CLA 1225 B CLA
1239 B PQN 2002 B BCR 4005 B BCR 4017 B LMG 5002
B BCR 4018 I EQ3 4020 I
11 1.63 1.77 75.0 -0.28 0.24 18.9 74 8 5 1 10 9 1 0  CLA 1202 B CLA 1203 B CLA 1208 B CLA 1209 B CLA
1210 B CLA 1226 B BCR 4005 B LMG 5002 B SQD 5008 B
12 1.63 1.77 77.4 0.18 0.41 15.2 75 9 5 1 12 11 1 0  CLA 1202 B CLA 1203 B CLA 1210 B CLA 1214 B CLA
1215 B CLA 1224 B CLA 1225 B CLA 1226 B BCR 4005
B LMG 5002 B
13 3.25 5.45 82.0 1.56 0.86 5.1 76 5 0 3 25 7 1 0  CLA 1103 A CLA 1104 A CLA 1105 A CLA 1106 A CLA
1107 A CLA 1111 A CLA 1112 A CLA 1117 A CLA 1126
A CLA 1127 A CLA 1140 A BCR 4003 A BCR 4012 A CLA
1229 B CLA 1230 B 45D 4011 B CLA 1301 F BCR 4014
F C7Z 4015 J
14 1.62 1.76 87.4 -0.26 0.18 13.6 73 6 5 1 12 11 2 0  CLA 1132 A CLA 1022 B CLA 1201 B CLA 1203 B CLA
1206 B CLA 1207 B CLA 1224 B CLA 1226 B CLA 1239
B PQN 2002 B BCR 4017 B LMG 5002 B BCR 4018 I EQ3
4020 I
15 2.75 3.55 95.7 1.10 0.86 5.3 63 4 0 2 17 22 0 0  CLA 1011 A CLA 1012 A CLA 1013 A CLA 1101 A CLA
1131 A CLA 1132 A CLA 1138 A CLA 1139 A CLA 1140
A PQN 2001 A CLA 1021 B CLA 1022 B CLA 1023 B CLA
1206 B CLA 1207 B CLA 1239 B PQN 2002 B BCR 4017
B BCR 4014 F BCR 4018 I EQ3 4020 I
16 2.16 2.25 96.9 -1.18 -0.21 15.7 87 9 2 9 8 5 0 0  CLA 1013 A CLA 1101 A CLA 1128 A CLA 1138 A CLA
1140 A PQN 2001 A LHG 5001 A BCR 4014 F
17 2.85 3.34 99.2 0.91 0.79 17.8 74 10 0 1 16 8 0 0  CLA 1103 A CLA 1104 A CLA 1111 A CLA 1116 A CLA
1117 A CLA 1123 A CLA 1124 A CLA 1125 A CLA 1127
A CLA 1128 A CLA 1131 A CLA 1133 A CLA 1134 A CLA
1135 A CLA 1136 A CLA 1137 A BCR 4003 A BCR 4008
A LHG 5003 A
18 1.82 2.05 118.6 1.08 0.69 5.9 68 4 0 4 26 20 1 0  CLA 1011 A CLA 1012 A CLA 1106 A CLA 1107 A CLA
1126 A CLA 1131 A CLA 1132 A BCR 4012 A CLA 1021
B CLA 1022 B CLA 1023 B CLA 1206 B CLA 1207 B CLA
1230 B CLA 1239 B PQN 2002 B 45D 4011 B BCR 4017
B BCR 4018 I EQ3 4020 I
19 2.16 2.86 120.0 -1.22 -0.14 18.9 84 12 2 10 10 4 0 0  CLA 1102 A CLA 1103 A CLA 1104 A CLA 1106 A CLA
1109 A CLA 1128 A LHG 5001 A
20 1.76 1.96 147.6 -0.69 0.07 14.0 83 11 2 12 17 6 0 0  CLA 1102 A CLA 1103 A CLA 1104 A CLA 1106 A CLA
1126 A CLA 1127 A CLA 1128 A BCR 4012 A LHG 5001
A 45D 4011 B
21 1.21 1.91 175.6 -0.29 0.13 15.4 83 16 2 12 19 6 1 0  CLA 1103 A CLA 1104 A CLA 1111 A CLA 1115 A CLA
1116 A CLA 1117 A CLA 1123 A CLA 1125 A CLA 1127
A CLA 1128 A CLA 1133 A CLA 1134 A BCR 4003 A BCR
4008 A LHG 5001 A CLA 1401 K
22 1.25 1.55 216.4 -0.22 0.36 16.6 76 17 6 5 27 19 6 0  CLA 1116 A CLA 1117 A CLA 1124 A CLA 1125 A CLA
1127 A CLA 1131 A CLA 1132 A CLA 1133 A CLA 1134
A CLA 1135 A CLA 1136 A CLA 1137 A BCR 4008 A LHG
5003 A CLA 1201 B CLA 1203 B CLA 1224 B CLA 1226
B CLA 1237 B CLA 1238 B CLA 1239 B PQN 2002 B BCR
4017 B LMG 5002 B BCR 4018 I EQ3 4020 I CLA 1502 L

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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