spacer
spacer

PDBsum entry 6fp6

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6fp6 calculated with MOLE 2.0 PDB id
6fp6
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
25 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.51 2.18 47.3 -2.24 -0.47 27.1 75 4 9 1 0 2 1 0  PPI 202 K PPI 203 K
2 1.46 1.90 65.0 -0.98 -0.25 14.9 79 5 4 6 5 3 1 1  
3 1.24 1.72 68.6 -1.36 -0.53 12.1 89 2 3 7 5 0 1 0  
4 1.26 1.73 92.5 -1.41 -0.53 12.5 80 4 2 10 3 1 1 0  
5 1.31 2.18 95.8 -1.20 -0.50 9.2 81 5 5 11 6 0 4 0  PPI 202 A
6 1.25 1.78 101.5 -1.15 -0.55 9.0 84 4 4 11 6 1 2 0  
7 1.17 2.04 107.6 -1.32 -0.61 10.9 85 2 7 11 5 0 3 0  
8 1.24 1.25 115.0 -0.78 -0.31 14.7 80 7 4 8 10 0 2 2  
9 1.21 1.34 122.2 -1.15 -0.39 10.9 85 7 5 13 8 1 3 2  
10 1.22 1.98 124.1 -1.31 -0.45 11.4 92 8 5 15 5 2 0 0  
11 1.41 1.87 127.6 -0.98 -0.32 11.7 87 8 4 15 8 1 2 2  
12 1.38 1.73 127.9 -1.39 -0.47 14.9 83 9 8 11 8 2 3 1  
13 1.52 2.81 136.3 -1.38 -0.58 14.4 81 7 7 10 8 1 2 0  PPI 202 A
14 1.27 1.27 141.1 -1.60 -0.73 16.5 84 7 11 8 6 1 1 0  PPI 202 K PPI 203 K
15 1.49 1.50 140.4 -1.22 -0.59 15.2 85 7 12 11 9 2 3 0  PPI 202 A
16 1.47 1.66 145.9 -1.35 -0.49 18.1 81 7 9 11 8 2 3 0  
17 1.18 1.96 150.6 -1.04 -0.34 10.3 86 9 5 18 8 2 2 2  
18 2.01 3.02 158.3 -1.58 -0.61 20.5 83 11 18 9 10 1 5 0  PPI 202 A PPI 202 K PPI 203 K
19 1.41 1.67 164.6 -1.62 -0.62 15.2 84 9 10 14 10 0 4 0  PPI 202 A
20 1.20 1.65 168.5 -1.03 -0.43 13.3 87 7 11 15 11 1 3 0  
21 1.22 1.31 173.3 -1.19 -0.48 12.2 86 9 10 16 10 1 2 2  PPI 202 A
22 1.45 2.00 179.6 -1.30 -0.44 13.2 85 9 10 21 14 2 6 1  
23 1.27 1.27 182.9 -1.14 -0.48 14.7 86 8 11 14 11 2 2 0  
24 1.17 1.61 185.7 -1.09 -0.48 12.5 87 8 10 18 14 1 2 0  PPI 202 A
25 1.18 1.64 198.5 -1.65 -0.62 15.0 84 8 9 14 8 0 4 0  
26 1.26 1.22 222.6 -1.04 -0.40 13.2 83 10 11 15 16 1 4 2  
27 1.26 1.64 212.2 -1.68 -0.65 16.0 83 9 9 14 8 1 3 0  
28 1.25 2.34 236.4 -1.60 -0.63 15.8 82 12 13 13 13 1 4 0  PPI 202 A
29 1.44 1.58 244.4 -1.54 -0.64 14.5 83 11 12 17 12 0 6 0  
30 1.28 1.42 248.6 -1.50 -0.52 15.5 85 11 15 22 12 1 7 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer