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PDBsum entry 6f6d

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 6f6d calculated with MOLE 2.0 PDB id
6f6d
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.38 3.72 29.7 -1.49 -0.26 14.8 88 5 0 6 3 2 0 0  FE 1701 A AKG 1703 A
2 1.15 2.03 47.7 -0.93 -0.18 10.8 83 7 2 9 6 4 3 1  AKG 1703 A
3 1.58 2.25 18.4 0.60 0.12 7.3 70 0 2 4 4 2 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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