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PDBsum entry 6f11

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6f11 calculated with MOLE 2.0 PDB id
6f11
Pores calculated on whole structure Pores calculated excluding ligands

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13 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.32 3.67 38.6 0.08 0.27 8.6 83 1 1 4 6 4 2 0  
2 1.31 3.19 46.3 -0.10 0.20 10.1 78 2 2 2 5 5 1 0  
3 1.20 3.49 48.6 -0.08 0.16 9.3 78 2 2 2 5 5 1 0  
4 1.32 3.67 59.0 -0.23 0.13 11.5 82 3 2 3 6 5 1 0  LMT 406 A LMT 405 E
5 1.66 2.28 60.9 -0.97 -0.36 17.9 78 2 5 1 2 2 3 0  NA 404 A ACT 405 A
6 1.30 3.72 61.3 -0.51 0.04 13.8 83 3 3 3 6 5 1 0  LMT 405 E
7 1.32 3.12 62.4 -0.25 0.33 11.5 85 4 2 3 7 4 2 0  LMT 406 A LMT 405 E
8 1.30 1.61 66.9 -0.75 -0.03 13.0 84 4 2 5 6 4 2 0  LMT 406 A LMT 405 E
9 1.21 3.49 71.2 -1.03 -0.12 16.5 81 6 3 4 4 6 1 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
10 1.26 1.27 73.9 -1.47 -0.45 19.7 79 5 5 3 2 5 1 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
11 1.22 1.40 79.8 -1.55 -0.39 21.0 74 5 7 5 2 8 2 0  
12 1.27 1.27 82.1 -0.47 -0.18 13.1 83 6 4 3 8 5 1 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
13 1.24 1.27 82.7 -0.47 -0.08 13.0 84 6 4 3 9 4 2 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
14 1.20 3.49 84.4 0.37 0.18 7.6 87 4 2 3 12 5 1 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
15 1.18 3.40 85.0 0.49 0.32 6.5 88 4 2 3 13 4 2 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
16 1.24 1.40 87.0 0.03 -0.07 9.9 85 4 4 2 10 4 1 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
17 1.19 1.19 87.2 -0.86 -0.27 15.8 77 3 7 4 4 7 2 0  
18 1.28 1.28 87.7 0.03 0.14 11.2 84 6 3 4 10 6 1 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
19 1.69 2.33 86.4 -0.59 -0.24 11.3 88 3 2 2 6 1 2 0  
20 1.25 1.38 87.6 0.07 0.04 9.4 87 4 4 2 11 3 2 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
21 1.24 3.42 88.5 0.63 0.39 6.2 87 4 2 3 14 5 2 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
22 1.25 1.40 90.8 -0.57 0.04 14.5 79 4 5 5 6 8 2 0  LMT 406 A LMT 405 B
23 1.18 1.35 96.6 1.25 0.32 5.8 90 2 3 1 26 5 1 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
24 1.22 1.22 113.4 0.05 0.14 10.9 82 5 5 5 13 8 2 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
25 1.21 3.41 114.9 -0.16 0.07 11.6 84 5 5 5 12 8 2 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
26 1.21 1.20 117.5 -0.41 -0.12 13.5 82 5 7 4 10 7 2 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E
27 1.72 2.47 125.5 -1.67 -0.53 24.6 81 5 11 3 6 3 4 0  NA 404 A NA 403 E ACT 404 E
28 2.04 2.12 136.1 -0.14 -0.36 8.8 87 4 4 2 7 2 1 0  
29 1.19 1.48 143.6 0.87 0.29 8.1 86 3 4 3 28 9 1 0  LMT 406 A LMT 405 B LMT 406 C LMT 401 D LMT 405 D
LMT 405 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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