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PDBsum entry 6dft

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6dft calculated with MOLE 2.0 PDB id
6dft
Pores calculated on whole structure Pores calculated excluding ligands

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21 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.15 2.68 33.6 -0.54 -0.07 9.8 73 4 0 1 4 1 3 1  
2 1.42 1.62 42.2 -1.21 -0.23 14.2 87 5 2 5 5 2 0 1  
3 1.61 1.90 50.2 -1.15 -0.39 12.9 88 3 2 6 5 2 1 1  
4 2.63 2.63 51.5 -1.44 -0.30 13.5 87 2 2 6 1 1 1 1  
5 2.06 2.06 55.1 -1.56 -0.35 19.4 86 5 7 8 3 4 0 1  NAD 500 K NAD 500 L
6 1.96 1.98 57.0 -1.48 -0.30 18.8 87 5 8 9 4 4 0 1  NAD 500 C NAD 500 D
7 1.42 1.79 66.4 -1.69 -0.50 18.8 86 7 6 8 2 3 0 1  
8 1.18 1.18 68.9 -1.18 -0.31 14.4 78 9 2 5 5 1 4 2  
9 1.46 1.73 69.9 -1.35 -0.47 17.8 91 5 9 13 8 3 0 0  NAD 500 K NAD 500 L
10 1.44 1.65 82.6 -1.67 -0.40 17.4 89 8 4 11 5 2 1 1  
11 1.28 1.28 83.6 -1.44 -0.53 17.6 89 5 6 6 7 0 1 0  
12 1.40 1.81 90.2 -2.44 -0.47 28.3 88 9 7 6 3 2 0 0  
13 1.42 1.70 90.2 -1.43 -0.27 19.9 73 6 4 2 5 3 2 1  
14 1.53 1.54 98.1 -1.26 -0.47 15.8 90 5 10 15 9 4 0 2  NAD 500 I NAD 500 J NAD 500 K NAD 500 L
15 1.24 1.24 120.5 -1.51 -0.38 18.8 81 11 6 6 7 2 2 2  
16 1.09 1.39 170.9 -1.44 -0.54 14.8 90 7 8 23 10 2 1 5  NAD 500 E NAD 500 F NAD 500 G NAD 500 H
17 1.38 1.59 172.3 -1.67 -0.42 17.1 90 11 7 19 9 2 1 2  NAD 500 E
18 1.43 1.49 435.3 -1.65 -0.45 18.4 85 29 24 29 21 6 6 4  NAD 500 E NAD 500 F NAD 500 G NAD 500 H

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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