spacer
spacer

PDBsum entry 6dda

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6dda calculated with MOLE 2.0 PDB id
6dda
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.47 1.48 42.2 -0.93 -0.48 18.0 75 4 3 1 4 1 1 1  G7J 605 C
2 1.83 2.02 44.7 -0.99 -0.17 11.6 86 6 1 4 4 3 0 0  BR 602 A K 606 A K 601 B
3 1.24 1.32 65.0 -1.17 -0.27 15.1 86 8 2 5 5 2 1 0  BR 604 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer