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PDBsum entry 6dcl

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 6dcl calculated with MOLE 2.0 PDB id
6dcl
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 1.96 27.2 -1.64 -0.38 29.6 85 5 3 0 3 0 1 0  A 4 C
2 1.41 1.42 34.1 -3.25 -0.77 38.1 81 6 4 3 0 1 0 0  G 5 C A 6 C U 7 C U 8 C
3 1.39 2.77 42.8 -1.99 -0.38 25.6 81 6 3 2 4 0 2 0  A 4 D
4 1.41 2.79 50.0 -1.75 -0.54 25.8 88 6 5 2 3 0 0 0  G 5 C A 6 C U 7 C U 8 C A 4 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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