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PDBsum entry 6dbs
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Pore analysis for: 6dbs calculated with  MOLE 2.0
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PDB id
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6dbs
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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22 pores,
coloured by radius |
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19 pores,
coloured by radius
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19 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.71 |
1.71 |
30.5 |
-1.36 |
-0.33 |
23.4 |
90 |
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3 |
2 |
2 |
8 |
1 |
0 |
0 |
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2 |
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1.71 |
1.71 |
30.8 |
-1.34 |
-0.33 |
23.3 |
90 |
3 |
2 |
2 |
8 |
1 |
0 |
0 |
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3 |
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1.73 |
1.73 |
31.2 |
-1.34 |
-0.32 |
23.5 |
90 |
3 |
2 |
2 |
8 |
1 |
0 |
0 |
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4 |
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1.33 |
1.33 |
48.9 |
-1.50 |
-0.50 |
18.7 |
86 |
8 |
5 |
7 |
4 |
0 |
1 |
0 |
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5 |
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1.64 |
1.85 |
55.2 |
-1.87 |
-0.40 |
19.0 |
80 |
3 |
3 |
4 |
3 |
0 |
4 |
0 |
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6 |
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1.31 |
2.11 |
106.2 |
-0.98 |
-0.27 |
12.3 |
80 |
6 |
4 |
8 |
9 |
6 |
4 |
0 |
NAG 1 E NAG 2 E BMA 3 E MAN 4 E
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7 |
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1.22 |
2.04 |
105.8 |
-1.03 |
-0.30 |
12.3 |
80 |
6 |
4 |
8 |
8 |
6 |
4 |
0 |
NAG 1 D NAG 2 D BMA 3 D
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8 |
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1.22 |
2.03 |
111.5 |
-0.88 |
-0.23 |
11.7 |
79 |
6 |
4 |
8 |
10 |
7 |
4 |
0 |
NAG 1 F NAG 2 F BMA 3 F MAN 4 F
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9 |
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1.79 |
2.06 |
118.2 |
-1.27 |
-0.37 |
14.5 |
81 |
9 |
6 |
9 |
11 |
3 |
7 |
0 |
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10 |
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1.32 |
2.06 |
132.4 |
-0.90 |
-0.39 |
8.2 |
83 |
3 |
5 |
13 |
6 |
7 |
7 |
0 |
NAG 1 F NAG 2 F BMA 3 F MAN 4 F
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11 |
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1.63 |
1.78 |
133.1 |
-1.03 |
-0.35 |
11.2 |
83 |
7 |
5 |
13 |
9 |
7 |
4 |
0 |
NAG 1 D NAG 2 D BMA 3 D
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12 |
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1.54 |
1.55 |
132.3 |
-0.97 |
-0.33 |
9.1 |
84 |
3 |
2 |
11 |
6 |
3 |
2 |
0 |
NAG 606 C NAG 1 E NAG 2 E BMA 3 E MAN 4 E
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13 |
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1.84 |
2.03 |
139.5 |
-0.89 |
-0.25 |
10.9 |
81 |
7 |
5 |
13 |
11 |
8 |
4 |
0 |
NAG 1 F NAG 2 F BMA 3 F MAN 4 F
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14 |
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1.41 |
1.41 |
157.1 |
-0.95 |
-0.44 |
12.7 |
83 |
5 |
6 |
11 |
10 |
2 |
5 |
0 |
NAG 1 E NAG 2 E BMA 3 E MAN 4 E
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15 |
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1.19 |
2.00 |
163.2 |
-1.09 |
-0.44 |
10.5 |
85 |
5 |
7 |
13 |
10 |
3 |
10 |
0 |
NAG 1 F NAG 2 F BMA 3 F MAN 4 F
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16 |
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1.25 |
2.04 |
178.4 |
-0.87 |
-0.44 |
8.2 |
86 |
3 |
6 |
17 |
8 |
7 |
7 |
0 |
NAG 1 D NAG 2 D BMA 3 D NAG 1 E NAG 2 E BMA 3 E M
AN 4 E
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17 |
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1.30 |
1.27 |
184.5 |
-0.78 |
-0.39 |
7.8 |
83 |
3 |
6 |
17 |
10 |
9 |
7 |
0 |
NAG 1 E NAG 2 E BMA 3 E MAN 4 E NAG 1 F NAG 2 F
BMA 3 F MAN 4 F
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18 |
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1.81 |
1.90 |
206.1 |
-1.48 |
-0.48 |
16.5 |
82 |
8 |
9 |
10 |
10 |
2 |
9 |
0 |
NAG 1 E NAG 2 E BMA 3 E MAN 4 E
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19 |
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1.25 |
1.40 |
38.6 |
-1.24 |
-0.69 |
19.0 |
86 |
1 |
6 |
6 |
1 |
0 |
0 |
3 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program