PDBsum entry 6dbr Go to PDB code:  Pore analysis for: 6dbr calculated with MOLE 2.0 PDB id 6dbr Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   25 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.78 2.02 27.7 -1.48 -0.28 25.8 84 6 1 2 1 0 0 0  DC 19 E DA 20 E DT 22 E DC 24 E DT 25 E DA 26 E DC 27 E DC 6 F DT 9 F DA 10 F DG 11 F 2 1.35 1.43 36.6 -1.81 -0.58 18.6 90 4 0 4 0 0 0 1  DC 4 E DG 27 F DC 28 F DC 29 F DA 30 F 3 2.01 2.01 38.0 -1.05 -0.43 19.0 83 5 4 2 2 1 0 0  DT 10 E DC 19 E DA 20 E DA 20 F DA 21 F DG 22 F D A 23 F DC 24 F DA 25 F 4 1.21 3.18 38.1 0.91 0.25 8.7 84 2 2 2 11 2 0 0   5 3.06 4.65 49.7 -2.15 -0.61 24.8 86 4 4 3 2 1 3 0  DT 10 E DG 11 E DT 12 E DA 21 F DG 22 F DA 23 F DC 24 F DA 25 F DG 16 H 6 1.28 3.19 56.5 0.11 -0.16 7.6 80 1 2 1 8 2 3 0  DG 16 H 7 1.88 2.81 59.4 -0.42 -0.27 9.9 80 3 3 3 5 4 3 0  DG 16 H 8 2.31 2.31 62.1 -2.00 -0.66 22.7 83 7 1 1 0 0 1 0  DG 1 E DC 8 E DC 9 E DT 10 E DA 23 F DC 24 F DA 25 F DC 29 F DA 30 F 9 2.01 2.01 66.7 -1.99 -0.50 28.2 82 6 9 1 4 1 3 0  DT 12 E DC 13 E DC 19 E DA 20 E DA 20 F DG 16 H 10 2.24 2.24 67.2 -1.05 -0.60 14.8 77 6 2 0 3 0 0 0  DC 19 E DA 20 E DA 30 E DC 31 E DT 32 E DG 33 E DG 34 E DA 3 F DG 4 F DT 5 F DC 6 F DT 7 F DA 10 F DG 11 F 11 1.19 2.36 72.7 -0.37 0.03 15.4 81 6 3 1 10 2 1 0  DT 3 E DC 4 E DG 27 F DC 28 F 12 1.26 1.57 80.9 -0.16 -0.19 11.5 81 3 3 4 15 1 1 1   13 2.66 2.83 85.4 -1.15 -0.62 6.3 78 1 2 3 1 0 4 1  DC 4 E DG 11 E DT 12 E DC 13 E DT 14 E DG 27 F DC 28 F DG 16 H DT 17 H DG 18 H DT 19 H DA 20 H 14 2.32 2.99 86.8 -2.50 -0.70 21.7 82 10 4 5 0 1 0 1  DG 21 G DA 10 H DC 11 H DC 12 H DA 13 H DC 14 H DT 15 H DG 16 H 15 1.35 3.19 90.1 -0.06 -0.15 9.6 84 3 5 4 12 2 4 0  DT 10 E DG 11 E DT 12 E DA 21 F DG 22 F DA 23 F DC 24 F DA 25 F 16 1.34 1.89 124.5 -0.60 -0.35 8.8 80 3 6 5 11 3 5 1  DG 16 F DT 17 F DG 16 H DT 17 H DG 18 H DT 19 H D A 20 H 17 1.32 1.73 134.0 -0.53 -0.24 14.1 79 5 9 3 13 3 4 1  DC 13 E DT 14 E DT 15 E DC 19 E DA 20 E DG 16 F DT 17 F DG 18 F DA 20 F 18 1.85 2.76 134.3 -1.04 -0.41 12.9 84 6 7 8 7 4 4 0  DT 10 E DG 11 E DT 12 E DA 21 F DG 22 F DA 23 F DC 24 F DA 25 F 19 1.32 1.55 141.2 -0.24 -0.25 7.8 79 1 5 5 12 3 6 2  DC 4 E DG 11 E DT 12 E DC 13 E DT 14 E DT 15 E DG 16 F DT 17 F DG 18 F DG 27 F DC 28 F 20 1.42 1.56 164.5 -1.13 -0.44 12.5 78 6 9 8 9 5 6 1  DG 16 F DT 17 F DG 16 H DT 17 H DG 18 H DT 19 H D A 20 H 21 1.40 1.43 165.6 -1.09 -0.39 13.9 79 6 7 9 9 5 5 2  DT 10 E DG 11 E DT 12 E DC 13 E DT 14 E DT 15 E DG 16 F DT 17 F DG 18 F DA 21 F DG 22 F DA 23 F DC 24 F DA 25 F 22 1.29 3.42 170.3 -0.07 -0.14 10.3 80 3 9 4 23 5 8 1  DC 13 E DT 14 E DT 15 E DG 16 F DT 17 F DG 18 F 23 1.36 1.38 181.2 -0.95 -0.41 11.8 77 4 7 9 10 5 7 3  DC 4 E DG 11 E DT 12 E DC 13 E DT 14 E DT 15 E DG 16 F DT 17 F DG 18 F DG 27 F DC 28 F Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.