PDBsum entry 6c98

Pore analysis for: 6c98 calculated with

MOLE 2.0

PDB id

6c98

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

6 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.61

1.72

34.2

-0.95

-0.26

12.6

72

3

3

3

3

3

1

0

2

1.59

1.78

41.9

-0.58

-0.25

4.4

63

1

1

4

3

5

2

0

ER7 101 D

3

1.52

1.77

43.7

-0.84

-0.28

6.1

64

1

2

4

3

5

2

0

ER7 101 B

4

1.50

1.77

49.1

-1.75

-0.26

22.9

70

7

4

3

3

6

1

0

PEG 103 B

5

1.54

1.77

55.8

-1.57

-0.39

18.8

74

5

5

3

6

2

2

0

6

2.06

2.80

57.8

-1.31

-0.09

16.7

73

8

2

7

1

10

2

1

CYS 301 A ER7 101 B PEG 103 B

7

1.65

2.54

58.8

-1.21

-0.17

12.5

73

4

3

6

1

7

3

1

CYS 301 A ER7 101 B

8

1.60

1.76

61.5

-1.46

-0.31

17.8

69

6

5

4

3

6

2

1

CYS 301 A ER7 101 B

9

1.51

2.68

64.5

-1.60

-0.33

18.1

72

4

5

4

3

4

2

1

CYS 301 A

10

1.57

2.60

74.2

-1.81

-0.30

23.4

77

7

5

5

1

6

2

1

CYS 301 A PEG 103 B CYS 301 C

11

1.63

1.78

75.1

-1.86

-0.39

22.9

74

7

7

4

3

4

2

1

CYS 301 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.