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PDBsum entry 6c6e

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 6c6e calculated with MOLE 2.0 PDB id
6c6e
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.25 2.26 16.0 -1.50 -0.46 12.0 67 1 1 2 0 2 1 0  
2 1.95 1.96 16.1 -1.48 -0.39 11.9 64 1 1 2 0 3 1 0  
3 2.13 2.30 16.7 -1.70 0.30 14.3 65 3 1 1 0 3 1 0  
4 1.92 1.94 16.9 -1.66 0.34 14.0 63 3 1 1 0 4 1 0  
5 2.09 4.30 20.9 -1.41 0.19 9.6 63 1 1 2 0 4 1 0  
6 1.92 1.95 21.1 -1.35 0.22 8.9 61 1 1 2 0 5 1 0  
7 1.42 1.59 25.4 0.15 0.37 3.7 80 1 0 2 7 4 0 0  EM4 305 A
8 1.07 2.72 46.8 0.85 0.68 5.0 73 2 1 3 11 7 1 0  EM4 305 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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