PDBsum entry 6c1e

Tunnel analysis for: 6c1e calculated with

MOLE 2.0

PDB id

6c1e

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.37

1.42

17.9

0.80

0.17

5.0

81

2

0

2

6

2

1

0

2

1.60

1.85

26.6

-1.55

-0.34

17.3

90

5

1

3

4

1

1

0

3

1.60

1.86

28.1

-0.48

-0.17

7.8

88

2

0

6

8

1

1

0

4

1.59

1.84

36.3

-1.72

-0.40

18.3

83

5

4

5

4

2

1

0

5

1.39

1.39

17.0

0.82

0.19

5.3

81

2

0

2

6

2

1

0

6

1.70

3.08

22.3

-0.61

-0.15

10.3

90

4

1

3

8

1

1

0

7

1.76

2.05

24.6

-0.38

-0.10

7.6

87

2

0

6

8

1

1

0

8

1.72

2.27

27.4

-0.69

-0.19

10.5

91

3

1

4

7

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.