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PDBsum entry 6bjs
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 6bjs calculated with MOLE 2.0 PDB id
6bjs
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.26 1.40 33.6 -1.75 -0.51 19.2 84 5 3 4 3 2 5 0  
2 3.28 3.28 38.5 -1.78 -0.62 16.9 81 4 1 1 0 0 2 0  DC 2 A DG 3 A DT 4 A DG 27 B DA 29 B DC 30 B DG
31 B
3 1.26 1.26 52.1 -1.62 -0.55 15.9 81 6 5 6 7 2 8 0  
4 3.60 3.60 53.1 -2.08 -0.51 25.6 80 8 4 4 2 2 2 0  DA 23 A DG 24 A DA 6 B DA 7 B DT 8 B
5 1.21 1.21 56.3 -1.25 -0.22 25.0 78 7 6 2 5 3 0 0  
6 2.66 2.66 63.8 -1.52 -0.68 16.3 89 6 2 2 1 0 3 0  DG 3 A DT 4 A DT 7 A DC 25 B DG 27 B DG 28 B DA
29 B DC 30 B
7 1.37 2.08 68.0 -1.92 -0.41 28.5 80 8 6 3 6 3 2 0  DC 2 A DG 27 B DA 29 B DC 30 B DG 31 B
8 3.29 3.30 78.3 -0.69 -0.33 13.8 84 7 1 5 9 2 2 0  DC 2 A DC 22 B DA 23 B DT 24 B DC 25 B DG 27 B DA
29 B DC 30 B DG 31 B C 19 R
9 1.38 2.08 85.9 -1.75 -0.47 23.9 80 11 7 3 6 3 4 0  DC 2 A DG 3 A DT 4 A DG 27 B DA 29 B
10 2.69 2.69 97.3 -0.82 -0.44 14.7 85 9 2 5 10 2 2 0  DT 7 A DC 22 B DA 23 B DT 24 B DC 25 B DG 27 B DG
28 B DA 29 B DC 30 B C 19 R
11 1.97 2.10 100.4 -1.79 -0.56 21.9 88 11 3 5 3 1 1 0  DT 16 A DC 17 A DA 20 A DA 21 A DG 22 A DA 7 B DT
8 B DT 10 B DC 11 B DT 12 B DT 13 B
12 3.54 3.54 101.7 -1.76 -0.59 18.8 83 10 1 3 0 1 2 0  DT 7 A DT 16 A DC 17 A DA 20 A DA 21 A DG 22 A DA
7 B DT 8 B DT 10 B DC 11 B DT 12 B DT 13 B DG 28
B DA 29 B DC 30 B
13 2.12 3.03 104.2 -1.93 -0.41 22.2 80 8 9 8 4 6 1 0  
14 1.58 2.03 105.7 -1.45 -0.43 21.4 81 13 7 6 8 3 1 0  DC 22 B DA 23 B C 19 R
15 2.65 2.77 105.5 -1.02 -0.40 15.4 81 8 4 5 7 3 3 0  DG 18 A DG 19 A DA 20 A DC 15 B DA 16 B DG 17 B
DC 18 B DA 19 B DC 20 B DA 21 B DC 22 B DT 24 B C
19 R U 22 R U 24 R G 25 R
16 2.64 2.76 115.4 -1.41 -0.51 16.8 83 8 5 3 7 1 4 0  DG 3 A DT 4 A DG 18 A DG 19 A DA 20 A DC 15 B DA
16 B DG 17 B DC 18 B DA 19 B DC 20 B DA 21 B DC
22 B DA 23 B DT 24 B DC 25 B DG 27 B DA 29 B U 22
R U 24 R G 25 R
17 1.30 2.82 122.6 0.67 0.12 9.6 81 7 4 5 27 4 3 0  DC 22 B DA 23 B DT 24 B DC 25 B C 19 R
18 2.75 2.75 135.8 -1.95 -0.60 22.3 85 15 5 5 3 1 5 0  DG 3 A DT 4 A DT 16 A DC 17 A DA 20 A DA 21 A DG
22 A DA 23 A DG 24 A DA 6 B DT 8 B DT 10 B DC 11
B DT 12 B DT 13 B DC 25 B DG 27 B DG 28 B DA 29 B
19 1.27 1.37 156.0 -1.01 -0.31 14.4 84 11 8 10 18 5 1 0  DC 2 A DA 23 B DT 24 B DC 25 B DG 27 B DA 29 B DC
30 B DG 31 B
20 3.70 3.87 158.2 -1.87 -0.55 22.4 81 16 6 7 6 3 5 0  DT 16 A DC 17 A DA 20 A DA 21 A DG 22 A DA 23 A
DG 24 A DA 6 B DT 8 B DT 10 B DC 11 B DT 12 B DT
13 B DC 14 B DC 15 B DC 18 B DA 19 B DC 20 B DA
21 B DC 22 B DT 24 B C 19 R U 22 R G 23 R U 24 R
G 25 R
21 1.33 2.21 170.4 -2.20 -0.45 27.8 80 15 14 7 8 5 1 0  
22 1.19 3.97 178.0 -0.43 -0.15 16.0 83 16 6 5 21 2 5 0  DT 16 A DC 17 A DA 20 A DA 21 A DG 22 A DA 23 A
DG 24 A DA 6 B DT 8 B DT 10 B DC 11 B DT 12 B DT
13 B DC 25 B DG 27 B DG 28 B
23 1.90 2.64 187.4 -2.10 -0.58 24.5 83 22 12 8 7 2 4 0  DT 16 A DC 17 A DA 20 A DA 21 A DG 22 A DA 23 A
DG 24 A DA 6 B DT 8 B DT 10 B DC 11 B DT 12 B DT
13 B DC 14 B DC 15 B DC 18 B DA 19 B DC 20 B DA
21 B DC 22 B DA 23 B DT 24 B U 22 R G 23 R U 24 R
G 25 R
24 1.28 3.12 190.2 -0.09 -0.05 11.3 81 9 10 9 30 4 7 0  DG 18 A DG 19 A DA 20 A DC 15 B DA 16 B DG 17 B
DC 18 B DA 19 B DC 20 B DA 21 B DC 22 B DA 23 B
DT 24 B DC 25 B U 22 R U 24 R G 25 R
25 1.31 1.31 185.7 -1.41 -0.25 23.5 81 13 15 6 16 6 1 0  
26 1.69 2.76 188.4 -1.37 -0.36 22.4 85 18 13 9 15 2 4 1  
27 1.70 2.75 200.3 -1.38 -0.33 26.1 84 21 17 7 17 3 1 1  C 19 R
28 1.71 2.74 203.5 -0.94 -0.18 20.5 83 20 13 4 18 5 5 1  
29 1.62 2.23 217.6 -1.04 -0.31 21.7 85 18 17 8 22 1 2 1  DC 2 A DC 22 B DA 23 B DT 24 B DC 25 B DG 27 B DA
29 B DC 30 B DG 31 B C 19 R
30 1.71 2.65 256.4 -1.33 -0.30 24.1 84 25 22 8 21 2 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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