PDBsum entry 6bf8

Pore analysis for: 6bf8 calculated with

MOLE 2.0

PDB id

6bf8

Pores calculated on whole structure

Pores calculated excluding ligands

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10 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.25

1.38

45.5

0.08

0.24

5.7

77

2

2

7

2

8

0

0

2

1.46

2.23

45.5

1.48

0.52

9.0

84

2

1

2

12

2

0

0

3

1.31

1.34

56.0

1.13

0.36

4.1

77

1

2

4

10

8

0

0

4

1.28

1.33

72.4

0.99

0.36

6.4

76

3

1

3

13

7

0

0

5

2.15

2.92

85.1

-2.45

-0.46

26.6

86

12

3

10

3

2

4

0

6

1.25

1.33

91.1

-0.39

0.17

14.4

79

8

4

5

13

7

2

0

7

1.26

1.31

99.9

-0.09

0.25

13.8

80

7

6

5

18

7

2

0

8

1.26

1.96

116.1

-1.14

-0.07

15.7

81

14

3

14

5

10

4

0

9

1.38

1.49

125.8

-1.53

-0.15

19.4

80

11

6

9

8

8

0

0

10

1.28

1.33

126.5

-1.69

-0.27

20.0

82

14

5

13

11

6

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.