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PDBsum entry 6bd9
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Pore analysis for: 6bd9 calculated with  MOLE 2.0
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PDB id
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6bd9
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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2 pores,
coloured by radius |
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8 pores,
coloured by radius
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8 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.15 |
2.67 |
32.6 |
2.32 |
0.68 |
2.1 |
80 |
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2 |
0 |
1 |
14 |
2 |
0 |
0 |
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2 |
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1.64 |
3.15 |
37.7 |
-2.35 |
-0.50 |
29.8 |
87 |
4 |
3 |
3 |
2 |
1 |
0 |
0 |
FAD 702 B
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3 |
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2.04 |
2.24 |
40.3 |
-2.01 |
-0.57 |
15.0 |
85 |
5 |
2 |
5 |
2 |
1 |
0 |
0 |
PYR 705 A TPP 704 B OXY 707 B OXY 712 B
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4 |
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2.04 |
2.24 |
40.3 |
-1.36 |
-0.26 |
10.0 |
80 |
3 |
1 |
4 |
3 |
3 |
0 |
0 |
PYR 705 A TPP 704 B OXY 707 B OXY 712 B
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5 |
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2.03 |
2.16 |
58.3 |
-1.18 |
-0.30 |
18.3 |
84 |
6 |
2 |
4 |
4 |
3 |
1 |
0 |
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6 |
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1.92 |
2.21 |
67.5 |
-2.04 |
-0.50 |
21.6 |
85 |
7 |
4 |
6 |
6 |
2 |
0 |
0 |
PYR 705 A FAD 702 B TPP 704 B OXY 712 B
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7 |
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2.03 |
2.18 |
77.7 |
-1.71 |
-0.39 |
21.6 |
85 |
10 |
3 |
6 |
3 |
2 |
1 |
0 |
PYR 705 A PYR 706 A FAD 702 B OXY 712 B
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8 |
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1.77 |
2.04 |
45.6 |
-1.57 |
-0.44 |
20.9 |
87 |
5 |
3 |
3 |
5 |
1 |
0 |
0 |
FAD 703 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program