PDBsum entry 6bb5

Oxygen transport

PDB id: 6bb5

Contents

Protein chains

139 a.a.

145 a.a.

Ligands

HEM-OXY ×2

Waters ×109

References listed in PDB file

Key reference

• Title: Hemoglobin crystals immersed in liquid oxygen reveal diffusion channels.
• Authors: J.R.Terrell, R.H.Gumpper, M.Luo.
• Ref.: Biochem Biophys Res Commun, 2018, 495, 1858-1863. [DOI no: 10.1016/j.bbrc.2017.12.038]
• PubMed id: 29246762

Abstract

Human hemoglobin (HbA) transports molecular oxygen (O₂) from the lung to tissues where the partial pressure of O₂is lower. O₂binds to HbA at the heme cofactor and is stabilized by a distal histidine (HisE7). HisE7 has been observed to occupy opened and closed conformations, and is postulated to act as a gate controlling the binding/release of O₂. However, it has been suggested that HbA also contains intraprotein oxygen channels for entrances/exits far from the heme. In this study, we developed a novel method of crystal immersion in liquid oxygen prior to X-ray data collection. In the crystals immersed in liquid oxygen, the heme center was oxidized to generate aquomethemoglobin. Increases of structural flexibility were also observed in regions that are synonymous with previously postulated oxygen channels. These regions also correspond to medically relevant mutations which affect O₂affinity. The way HbA utilizes these O₂channels could have a profound impact on understanding the relationship of HbA O₂transport within these disease conditions. Finally, the liquid oxygen immersion technique can be utilized as a new tool to crystallographically examine proteins and protein complexes which utilize O₂for enzyme catalysis or transport.