PDBsum entry 6bap

Pore analysis for: 6bap calculated with

MOLE 2.0

PDB id

6bap

Pores calculated on whole structure

Pores calculated excluding ligands

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18 pores, coloured by radius

17 pores, coloured by radius

17 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.23

2.40

27.0

-0.68

0.02

19.1

80

4

1

0

3

2

2

0

2

1.52

1.68

27.8

0.17

0.21

6.8

77

3

1

2

5

5

0

0

3

1.23

1.49

30.5

-0.82

0.00

18.4

74

4

2

1

4

3

1

0

4

2.69

5.59

31.1

-2.39

-0.24

31.7

83

5

5

4

2

1

1

0

5

1.91

1.95

32.4

-0.34

-0.16

17.7

81

2

3

1

4

0

1

0

6

1.19

1.28

35.8

-0.74

0.07

20.3

69

4

2

1

5

4

1

0

7

1.46

2.46

40.0

-0.70

0.07

14.2

80

5

2

4

6

3

1

1

BLR 601 B

8

1.52

1.68

51.6

-0.11

0.08

9.9

76

5

3

2

9

6

1

1

9

1.20

1.52

52.6

-0.74

-0.02

18.9

81

6

2

4

8

2

2

1

BLR 601 B

10

3.15

4.91

58.4

-2.22

-0.53

25.2

80

8

5

4

4

2

1

0

11

3.08

3.21

60.9

-2.18

-0.50

26.3

79

9

6

4

3

2

2

0

12

2.09

2.16

61.9

-0.58

-0.35

14.1

84

4

4

3

6

2

0

0

13

1.35

3.08

69.3

0.66

0.43

10.2

79

7

2

3

15

3

3

1

14

1.59

1.80

76.9

0.89

0.36

6.6

78

3

3

1

13

7

0

0

15

1.27

1.50

146.7

-1.59

-0.35

21.8

79

12

12

5

8

4

1

0

16

1.90

4.09

26.9

-1.49

-0.24

23.4

78

5

1

1

3

1

1

1

17

1.57

2.16

102.7

0.20

0.10

14.8

75

2

4

2

11

6

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.