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PDBsum entry 6b0r

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6b0r calculated with MOLE 2.0 PDB id
6b0r
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.24 1.27 61.1 -1.26 -0.51 14.8 78 6 1 4 0 2 2 0  EDO 506 A DT 5 B DG 6 B DT 2 C DA 3 C DA 4 C DC 5
C DC 6 C DC 7 C DC 15 C DT 13 E DT 14 E DA 15 E D
A 4 F DC 5 F DC 6 F DC 7 F
2 1.25 1.26 70.0 -1.54 -0.50 18.4 77 8 1 3 0 2 2 0  EDO 506 A DT 5 B DG 6 B DA 9 B DA 4 C DC 5 C DC 6
C DC 7 C DC 15 C DT 13 E DT 14 E DA 15 E DA 4 F
DC 5 F DC 6 F DC 7 F
3 1.12 1.40 26.5 -1.84 -0.69 18.6 87 6 1 3 0 0 0 0  DA 9 E DG 10 E DA 3 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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