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PDBsum entry 6ac8

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 6ac8 calculated with MOLE 2.0 PDB id
6ac8
Pores calculated on whole structure Pores calculated excluding ligands

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15 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.85 2.80 38.9 -1.50 -0.37 25.4 85 4 4 1 6 1 2 0  
2 1.55 1.55 42.9 -1.18 -0.39 22.3 82 6 4 1 12 1 1 0  
3 1.86 2.88 55.8 -0.61 -0.14 20.0 85 6 5 2 9 1 2 0  
4 2.25 2.30 72.4 -1.44 -0.41 20.5 85 11 5 3 9 0 3 0  
5 2.93 3.03 81.9 -2.05 -0.51 22.1 85 9 4 10 3 2 0 0  
6 2.86 2.99 102.3 -2.26 -0.59 24.8 83 10 8 5 3 3 1 0  
7 1.34 1.33 108.9 -0.60 -0.29 11.9 81 2 7 5 9 2 2 0  
8 1.29 1.27 114.2 -1.53 -0.36 21.6 82 9 12 5 13 2 4 0  
9 1.36 1.35 114.9 -1.19 -0.37 20.1 84 9 7 8 10 3 0 0  
10 1.30 1.29 119.7 -1.14 -0.36 22.3 84 12 10 4 11 2 1 0  
11 1.36 1.45 128.6 -0.87 -0.27 16.7 85 11 6 7 17 3 1 0  
12 1.30 1.29 128.8 -0.72 -0.33 16.5 86 9 8 6 15 2 1 0  SO4 1303 A
13 2.00 2.97 141.4 -1.59 -0.42 24.3 85 17 12 7 9 2 2 0  SO4 1303 A
14 2.23 2.41 145.5 -1.48 -0.35 15.4 82 11 7 10 8 3 4 0  
15 2.32 3.96 143.2 -2.03 -0.47 21.9 81 12 11 7 4 2 3 0  
16 2.28 2.45 145.0 -1.76 -0.37 25.2 84 19 10 8 11 3 3 0  
17 2.00 3.00 150.3 -1.35 -0.40 16.6 84 9 9 9 8 2 3 0  SO4 1303 A
18 2.05 3.17 172.8 -1.75 -0.36 24.2 83 21 10 12 12 5 4 0  
19 2.03 2.92 190.2 -1.64 -0.44 23.8 83 20 15 12 13 4 3 0  SO4 1303 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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