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PDBsum entry 6abh

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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 6abh calculated with MOLE 2.0 PDB id
6abh
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.12 2.14 38.7 -0.14 0.00 17.2 80 4 1 0 5 1 0 0  
2 1.13 2.04 40.4 1.55 0.52 2.1 76 1 0 0 7 2 2 0  
3 2.54 2.66 60.1 -1.63 -0.38 23.1 89 4 4 3 3 2 0 0  
4 1.39 1.69 65.6 -0.40 -0.27 11.6 77 3 3 2 6 2 1 0  
5 2.06 2.27 73.9 -1.27 -0.25 15.5 77 6 6 4 4 5 4 0  
6 2.59 2.68 74.2 -1.36 -0.46 17.8 93 7 5 4 6 1 0 0  
7 1.54 3.25 77.6 -0.93 -0.08 16.0 75 5 5 4 4 5 5 0  
8 2.52 2.73 98.8 -1.38 -0.48 16.7 92 9 6 7 8 3 0 0  
9 1.57 3.42 101.1 -0.98 -0.15 15.2 79 7 6 6 6 6 5 0  
10 2.06 2.20 127.9 -1.28 -0.39 17.6 83 11 9 5 8 7 4 0  
11 2.00 2.50 129.6 -1.63 -0.47 21.6 84 13 10 9 8 3 5 0  
12 2.55 2.69 131.1 -1.59 -0.49 19.8 90 12 11 11 7 3 0 0  
13 1.84 2.08 135.0 -1.13 -0.29 15.8 76 10 10 6 9 11 8 0  
14 1.45 1.48 133.6 -2.07 -0.50 24.4 85 11 10 7 4 1 2 0  
15 1.28 1.40 142.7 -0.97 -0.42 15.8 83 13 9 6 14 7 1 0  
16 1.87 2.12 141.7 -1.77 -0.35 22.2 77 11 12 6 3 7 5 0  
17 1.45 1.54 158.7 -1.25 -0.49 18.4 93 13 11 8 12 2 0 0  
18 2.05 2.10 154.2 -1.98 -0.45 24.4 87 15 12 7 6 2 2 0  
19 1.75 2.03 155.8 -1.57 -0.35 13.4 83 11 7 14 7 6 4 0  
20 1.75 1.92 160.2 -1.18 -0.39 16.2 86 9 12 12 11 7 4 0  
21 1.47 1.47 165.8 -1.09 -0.38 15.9 85 12 12 9 13 6 4 0  
22 1.20 2.12 161.8 -1.00 -0.36 17.7 83 11 11 9 14 3 1 0  
23 1.23 1.28 180.7 -1.17 -0.46 16.4 90 15 11 13 15 6 0 1  
24 1.72 2.05 180.2 -1.19 -0.28 11.7 79 10 8 14 9 11 8 0  
25 1.24 1.70 180.9 -0.53 -0.19 15.1 82 10 9 5 16 1 5 0  
26 1.27 1.42 209.6 -0.70 -0.26 15.7 87 12 11 11 14 3 4 0  
27 2.12 2.05 209.2 -1.61 -0.51 19.9 89 19 14 11 9 4 2 0  
28 1.28 1.84 253.5 -0.59 -0.21 12.5 82 14 11 12 17 7 8 0  
29 1.62 1.82 261.3 -1.57 -0.49 21.6 90 17 19 14 12 3 2 0  
30 1.92 2.38 298.4 -1.70 -0.45 21.9 87 30 19 16 13 5 6 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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