spacer
spacer

PDBsum entry 5zg0

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 5zg0 calculated with MOLE 2.0 PDB id
5zg0
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.14 1.14 27.9 -3.17 -0.70 38.3 90 4 2 2 0 0 0 0  ZN 903 F
2 1.81 1.81 32.7 -0.59 -0.17 13.0 83 3 3 4 3 3 0 0  
3 3.50 3.89 34.4 -2.36 -0.64 30.9 80 8 4 0 2 0 0 0  
4 1.82 1.82 59.1 -1.51 -0.49 16.8 86 6 5 9 4 4 0 0  
5 1.87 2.01 78.3 -2.88 -0.52 36.7 83 11 6 3 3 0 0 0  
6 1.66 1.79 79.7 -1.43 -0.41 19.6 82 8 9 7 4 5 0 0  
7 3.32 4.44 81.9 -2.52 -0.62 31.2 85 11 6 1 1 0 0 0  ZN 904 D
8 1.86 1.99 83.9 -2.73 -0.56 37.0 81 15 8 3 4 0 1 0  
9 2.51 4.08 88.7 -2.06 -0.44 26.6 80 12 10 6 8 3 1 0  ACT 1004 C
10 1.55 1.64 126.3 -2.63 -0.56 30.7 84 18 9 8 3 1 0 0  ACT 1005 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer