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PDBsum entry 5yv4
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Pore analysis for: 5yv4 calculated with  MOLE 2.0
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PDB id
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5yv4
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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8 pores,
coloured by radius |
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11 pores,
coloured by radius
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11 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.92 |
2.01 |
32.4 |
-0.09 |
-0.08 |
12.3 |
77 |
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4 |
2 |
2 |
1 |
4 |
0 |
0 |
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MG 901 A TTP 903 A DG 841 B DG 842 B DC 873 C
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2 |
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2.33 |
2.38 |
33.8 |
0.19 |
-0.05 |
9.3 |
83 |
4 |
2 |
3 |
1 |
3 |
0 |
0 |
TTP 903 A DC 838 B DT 839 B DG 841 B DG 842 B DC
872 C DC 873 C
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3 |
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1.94 |
1.94 |
35.0 |
-0.17 |
-0.33 |
8.8 |
75 |
4 |
0 |
0 |
1 |
1 |
0 |
0 |
DC 845 G DC 846 G DT 847 G DA 848 G DG 849 G DA
870 H
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4 |
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1.79 |
1.92 |
36.6 |
-0.87 |
-0.41 |
14.3 |
80 |
5 |
2 |
1 |
1 |
1 |
0 |
0 |
DC 845 G DC 846 G DT 847 G DA 848 G DG 849 G DA
870 H
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5 |
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2.88 |
4.08 |
40.3 |
-1.91 |
-0.60 |
23.7 |
79 |
5 |
4 |
1 |
1 |
1 |
0 |
0 |
DT 847 G DA 848 G DA 867 H DG 868 H DG 869 H
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6 |
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3.28 |
3.26 |
42.4 |
-1.59 |
-0.65 |
19.4 |
79 |
4 |
3 |
1 |
1 |
1 |
0 |
0 |
DC 852 B DT 866 C DT 847 G DA 848 G DG 849 G DG
850 G DA 851 G DA 867 H DG 868 H DG 869 H
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7 |
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2.26 |
2.25 |
52.2 |
-0.16 |
-0.44 |
6.5 |
76 |
4 |
0 |
2 |
2 |
2 |
0 |
0 |
DG 841 B DG 842 B DG 843 B DT 844 B DC 845 B DC
846 B DT 847 B DA 848 B DA 870 C DC 872 C DC 873 C
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8 |
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2.23 |
2.24 |
53.9 |
-1.69 |
-0.44 |
24.2 |
83 |
7 |
2 |
2 |
3 |
1 |
1 |
0 |
DT 839 G DG 843 G DT 844 G DC 845 G DC 846 G DT
847 G DC 864 H DT 866 H DA 867 H DG 869 H DA 870
H DC 871 H
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9 |
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1.78 |
1.88 |
56.3 |
-1.80 |
-0.63 |
20.5 |
80 |
5 |
2 |
2 |
1 |
1 |
0 |
0 |
DG 843 B DT 844 B DC 845 B DC 846 B DT 866 C DG
868 C DG 869 C DA 870 C DC 871 C
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10 |
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2.19 |
2.18 |
60.2 |
-0.30 |
-0.10 |
15.3 |
82 |
6 |
2 |
3 |
3 |
2 |
0 |
0 |
TTP 903 A DC 838 B DT 839 B DG 842 B DG 843 B DC
872 C DC 873 C
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11 |
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2.18 |
2.19 |
70.4 |
-0.57 |
-0.39 |
12.4 |
78 |
6 |
0 |
2 |
3 |
1 |
0 |
0 |
DG 842 B DG 843 B DT 844 B DC 845 B DC 846 B DT
847 B DA 848 B DA 870 C DC 872 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program