PDBsum entry 5yv2 Go to PDB code:  Pore analysis for: 5yv2 calculated with MOLE 2.0 PDB id 5yv2 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.20 2.20 32.3 -0.89 -0.55 12.8 75 3 0 0 2 1 0 0  DT 844 G DC 845 G DC 846 G DT 847 G DA 848 G DG 849 G DG 861 H DA 870 H DC 871 H DC 872 H 2 2.04 2.04 36.9 -2.37 -0.65 25.4 82 5 2 1 1 1 0 0  DC 838 G DT 839 G DA 840 G DG 843 G DT 844 G DC 845 G DC 846 G DT 847 G DC 864 H DT 866 H DA 867 H DG 868 H DG 869 H DA 870 H DC 871 H 3 1.81 1.91 51.5 -1.62 -0.56 22.1 79 4 1 0 2 0 0 0  DT 844 G DC 845 G DC 846 G DT 847 G DT 863 H DC 864 H DT 866 H 4 1.85 1.85 72.2 -1.42 -0.37 21.7 73 9 2 0 2 1 1 0  DG 842 G DG 843 G DT 844 G DC 845 G DT 847 G DT 863 H DC 864 H DT 866 H 5 2.35 2.35 74.0 -0.98 -0.41 14.6 72 9 2 1 1 3 1 0  DG 842 G DG 843 G DT 844 G DC 845 G DC 846 G DT 847 G DA 848 G DG 849 G DA 870 H DC 871 H DC 872 H 6 2.05 2.05 83.9 -0.81 -0.60 13.6 90 2 4 2 5 0 0 0  DC 845 B DC 846 B DT 847 B DA 851 B DC 852 B DC 853 B DT 863 C DC 864 C DC 865 C DT 866 C DT 839 G DT 847 G DA 848 G DG 849 G DG 850 G DA 851 G DA 867 H DG 868 H DG 869 H DA 870 H Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.