PDBsum entry 5yv1 Go to PDB code:  Pore analysis for: 5yv1 calculated with MOLE 2.0 PDB id 5yv1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.31 3.38 25.2 -1.70 -0.46 25.2 81 4 2 1 2 1 0 0  DC 838 G DT 839 G DT 847 G DA 848 G DG 849 G DA 870 H 2 2.56 2.74 27.0 -0.17 -0.24 10.4 77 4 0 0 1 1 0 0  DC 845 G DC 846 G DT 847 G DA 848 G DG 849 G DG 861 H DA 870 H 3 2.15 2.15 27.3 -0.27 -0.47 6.9 68 2 0 0 0 1 0 0  DC 845 B DC 846 B DT 847 B DA 848 B DA 870 C 4 2.15 2.15 27.8 -0.15 -0.23 10.0 77 4 0 0 1 1 0 0  DC 845 B DC 846 B DT 847 B DA 848 B DA 870 C 5 2.69 2.99 31.4 -1.28 -0.58 16.3 76 5 1 1 0 1 0 0  DC 845 G DC 846 G DT 847 G DA 848 G DG 849 G DG 861 H DA 870 H 6 2.43 2.58 49.0 -1.20 -0.47 21.7 84 6 3 1 3 0 0 0  DT 839 G DT 847 G DA 848 G DG 849 G DG 861 H DA 870 H DC 871 H DC 872 H DC 873 H 7 2.33 2.33 86.5 -1.52 -0.37 20.0 77 10 2 3 3 3 2 0  DG 841 B DG 842 B DG 843 B DT 844 B DC 845 B DC 846 B DC 872 C DC 873 C DA 848 G DG 849 G 8 2.27 2.27 89.0 -1.25 -0.32 21.3 80 10 3 3 3 2 2 0  DG 841 B DG 842 B DG 843 B DT 844 B DC 845 B DC 846 B DC 872 C DC 873 C DT 839 G Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.