 |
PDBsum entry 5yv0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 5yv0 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5yv0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
11 pores,
coloured by radius |
|
11 pores,
coloured by radius
|
11 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.50 |
2.84 |
25.8 |
-1.68 |
-0.50 |
21.5 |
81 |
|
4 |
2 |
1 |
2 |
1 |
0 |
0 |
|
DC 838 G DT 847 G DA 848 G DG 849 G DA 870 H
|
 |
|
2 |
 |
2.54 |
2.84 |
26.5 |
-1.05 |
-0.60 |
18.4 |
88 |
3 |
2 |
1 |
3 |
0 |
0 |
0 |
DA 851 B DT 866 C DT 847 G DA 848 G DG 849 G DG
850 G DA 867 H DG 868 H DG 869 H DA 870 H
|
|
3 |
 |
3.44 |
3.62 |
26.9 |
-1.95 |
-0.47 |
28.1 |
80 |
3 |
1 |
0 |
2 |
1 |
0 |
0 |
DC 838 G DT 839 G DA 870 H DC 871 H DC 872 H DC
873 H
|
|
4 |
 |
2.84 |
2.97 |
29.2 |
-1.79 |
-0.63 |
20.4 |
80 |
4 |
3 |
1 |
1 |
1 |
0 |
0 |
DA 851 B DT 866 C DT 847 G DA 848 G DG 849 G DG
850 G DA 867 H DG 868 H DG 869 H
|
|
5 |
 |
2.14 |
2.16 |
32.2 |
-1.19 |
-0.54 |
16.1 |
71 |
4 |
0 |
0 |
1 |
1 |
0 |
0 |
DT 844 G DC 845 G DC 846 G DT 847 G DA 848 G DG
849 G DG 861 H DA 870 H DC 871 H DC 872 H
|
|
6 |
 |
2.38 |
3.05 |
33.9 |
-0.37 |
-0.22 |
15.0 |
80 |
4 |
2 |
0 |
3 |
1 |
0 |
0 |
DC 838 G DC 845 G DC 846 G DT 847 G DA 870 H
|
|
7 |
 |
2.10 |
2.16 |
36.6 |
-2.32 |
-0.66 |
23.8 |
85 |
5 |
1 |
1 |
1 |
0 |
0 |
0 |
DC 838 G DT 839 G DA 840 G DG 843 G DT 844 G DC
845 G DC 846 G DT 847 G DC 864 H DT 866 H DA 867
H DG 868 H DG 869 H DA 870 H DC 871 H
|
|
8 |
 |
2.16 |
2.21 |
44.1 |
-1.91 |
-0.47 |
22.4 |
82 |
4 |
2 |
1 |
2 |
1 |
1 |
0 |
DT 839 B DG 843 B DT 844 B DC 845 B DC 846 B DT
847 B DT 863 C DC 864 C DT 866 C DA 867 C DG 868
C DG 869 C DA 870 C DC 871 C
|
|
9 |
 |
2.20 |
2.20 |
44.8 |
-0.81 |
-0.54 |
11.0 |
78 |
3 |
1 |
1 |
0 |
1 |
0 |
0 |
DC 845 B DC 846 B DT 847 B DA 848 B DC 864 C DT
866 C DA 870 C
|
|
10 |
 |
1.80 |
1.92 |
45.6 |
-2.04 |
-0.56 |
24.5 |
77 |
5 |
1 |
1 |
1 |
0 |
1 |
0 |
DT 844 G DC 845 G DC 846 G DT 847 G DT 863 H DC
864 H DT 866 H
|
 |
11 |
 |
2.13 |
2.19 |
47.7 |
-1.11 |
-0.52 |
16.8 |
76 |
6 |
1 |
0 |
3 |
1 |
0 |
0 |
DC 838 G DT 844 G DC 845 G DC 846 G DT 847 G DA
870 H DC 871 H DC 872 H
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program