PDBsum entry 5yus Go to PDB code:  Pore analysis for: 5yus calculated with MOLE 2.0 PDB id 5yus Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.16 2.16 29.1 -0.63 -0.22 17.1 84 5 2 3 2 2 0 0  TTP 900 F MG 901 F DG 842 G DG 843 G DC 873 H 2 1.84 2.00 32.8 -0.84 -0.22 18.7 80 5 3 2 2 3 0 0  TTP 900 F MG 901 F DG 842 G DG 843 G DC 873 H 3 2.33 2.33 32.9 -0.49 -0.43 10.9 77 2 0 1 3 1 0 0  DG 841 B DG 842 B DG 843 B DT 844 B DC 845 B DC 846 B DT 847 B DC 872 C 4 2.61 3.25 35.6 -0.62 -0.31 17.5 83 5 1 0 4 1 0 0  DC 845 G DC 846 G DT 847 G DA 870 H 5 2.19 2.19 36.0 -2.02 -0.56 22.9 84 4 2 2 0 1 0 0  DT 839 G DG 843 G DT 844 G DC 845 G DC 846 G DC 864 H DT 866 H DA 867 H DG 869 H DA 870 H DC 871 H 6 2.82 2.85 36.2 -0.90 -0.42 14.2 74 6 1 0 1 2 0 0  DC 845 G DC 846 G DT 847 G DA 848 G DG 849 G DA 870 H 7 2.69 2.89 38.7 -1.06 -0.51 20.9 87 5 3 1 4 0 0 0  DC 838 G DT 839 G DT 847 G DA 848 G DG 849 G DG 850 G DA 851 G DG 860 H DA 867 H DG 868 H DG 869 H DA 870 H 8 1.85 2.00 39.8 -2.10 -0.53 26.7 85 4 5 2 3 1 1 0  TTP 900 F MG 901 F DT 837 G DC 838 G DT 839 G DC 872 H DC 873 H 9 2.61 3.34 43.2 -1.11 -0.50 20.7 86 5 2 0 5 0 0 0  DT 866 C DT 847 G DA 848 G DG 849 G DG 850 G DA 851 G DA 867 H DG 868 H DG 869 H DA 870 H 10 1.12 1.75 45.9 -0.97 -0.35 14.5 78 4 3 2 2 3 1 0  TTP 900 F MG 901 F DG 842 G DG 843 G DT 844 G DC 845 G DC 872 H DC 873 H 11 2.69 2.90 47.6 -0.56 -0.36 16.1 84 6 2 1 3 1 0 0  DC 838 G DT 839 G DC 845 G DC 846 G DT 847 G DA 870 H 12 2.83 2.86 51.2 -0.91 -0.49 16.2 81 6 2 0 3 1 0 0  DT 866 C DC 845 G DC 846 G DT 847 G DA 848 G DG 849 G DG 850 G DA 851 G DA 867 H DG 868 H DG 869 H DA 870 H 13 2.68 2.92 53.0 -1.01 -0.49 19.5 86 5 3 1 4 0 0 0  DT 866 C DC 838 G DT 839 G DT 847 G DA 848 G DG 849 G DG 850 G DA 851 G DA 867 H DG 868 H DG 869 H DA 870 H 14 2.69 2.92 55.8 -1.08 -0.50 19.4 86 6 2 1 6 1 0 0  DT 839 G DT 847 G DA 848 G DG 849 G DG 850 G DA 851 G DA 867 H DG 868 H DG 869 H DA 870 H DC 871 H DC 872 H 15 2.21 2.21 61.5 -1.52 -0.77 16.9 80 4 2 1 0 0 0 0  DC 846 B DT 847 B DA 851 B DC 852 B DC 853 B DT 863 C DC 864 C DC 865 C DT 866 C DG 850 G DA 851 G 16 1.56 1.63 85.7 -1.58 -0.69 20.5 78 8 5 0 2 1 0 0  DT 847 G DA 848 G DG 849 G DG 850 G DG 861 H DT 866 H DA 867 H DG 868 H DG 869 H 17 1.43 4.32 89.1 -1.41 -0.46 19.8 74 13 3 0 2 3 1 0  DG 842 G DG 843 G DT 844 G DC 845 G DC 846 G DT 847 G DA 848 G DG 849 G DG 861 H DA 870 H DC 872 H Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.