PDBsum entry 5yus Go to PDB code:  Tunnel analysis for: 5yus calculated with MOLE 2.0 PDB id 5yus Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.60 2.07 26.1 -2.73 -0.58 37.2 90 2 2 0 0 0 0 0  DC 845 B DC 846 B DT 866 C DG 868 C 2 1.60 2.07 26.1 -2.73 -0.58 37.2 90 2 2 0 0 0 0 0  DC 845 B DC 846 B DT 866 C DG 868 C 3 1.61 2.12 32.3 -1.98 -0.39 23.5 80 4 1 1 1 1 0 0  DT 839 B DT 844 B DG 868 C DG 869 C DA 870 C DC 871 C 4 1.70 2.31 43.1 -1.97 -0.41 24.2 80 6 1 1 1 1 0 0  DT 839 B DA 840 B DG 841 B DG 842 B DG 843 B DT 844 B DG 868 C DG 869 C DC 871 C DC 872 C 5 1.70 2.31 43.1 -1.97 -0.41 24.2 80 6 1 1 1 1 0 0  DT 839 B DA 840 B DG 841 B DG 842 B DG 843 B DT 844 B DG 868 C DG 869 C DC 871 C DC 872 C 6 1.61 2.12 32.3 -1.98 -0.39 23.5 80 4 1 1 1 1 0 0  DT 839 B DT 844 B DG 868 C DG 869 C DA 870 C DC 871 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.