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PDBsum entry 5ypr
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Tunnel analysis for: 5ypr calculated with  MOLE 2.0
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PDB id
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5ypr
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.29 |
1.35 |
16.0 |
0.09 |
0.17 |
16.0 |
82 |
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3 |
2 |
1 |
3 |
1 |
0 |
0 |
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2 |
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1.29 |
1.35 |
17.2 |
0.40 |
0.35 |
9.4 |
81 |
3 |
0 |
1 |
3 |
1 |
0 |
0 |
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3 |
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1.32 |
1.40 |
17.7 |
-0.29 |
-0.01 |
17.0 |
82 |
3 |
2 |
1 |
3 |
1 |
0 |
0 |
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4 |
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1.36 |
1.44 |
18.9 |
-0.12 |
0.16 |
12.0 |
81 |
3 |
0 |
1 |
3 |
1 |
0 |
0 |
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5 |
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1.03 |
1.04 |
27.2 |
-1.91 |
-0.50 |
20.9 |
87 |
5 |
2 |
2 |
3 |
0 |
1 |
0 |
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6 |
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1.07 |
1.08 |
27.6 |
-1.56 |
-0.48 |
19.0 |
83 |
4 |
2 |
2 |
3 |
0 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program