PDBsum entry 5yjs Go to PDB code:  Tunnel analysis for: 5yjs calculated with MOLE 2.0 PDB id 5yjs Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.37 1.37 26.2 -0.51 0.21 20.3 78 4 0 1 5 2 0 0   2 1.36 1.36 29.5 -0.97 0.08 20.6 81 6 0 2 5 2 0 0   3 1.36 1.35 32.3 0.41 0.17 7.3 77 2 1 2 6 3 0 0   4 1.36 1.36 48.3 -1.42 -0.23 19.5 80 6 2 4 6 4 0 0   5 1.65 1.73 22.9 1.13 0.30 8.3 86 1 1 2 9 1 0 1  PG4 605 A 6 1.65 1.91 22.3 1.00 0.38 7.9 85 1 1 2 8 1 0 1   7 1.12 1.12 30.4 -1.76 -0.67 16.7 79 2 3 1 2 1 1 0   8 1.13 1.13 34.4 -1.45 -0.48 17.6 78 2 3 1 4 1 1 0   9 1.13 1.13 34.6 -1.70 -0.55 18.8 80 2 3 1 5 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.