PDBsum entry 5yf9 Go to PDB code:  Tunnel analysis for: 5yf9 calculated with MOLE 2.0 PDB id 5yf9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.27 25.9 -2.16 -0.55 33.3 81 6 4 0 2 0 0 0   2 1.14 1.28 35.7 -2.23 -0.62 30.6 77 3 5 0 2 0 1 0   3 1.16 1.28 48.0 -2.59 -0.55 27.0 78 7 5 4 3 2 0 0  SO4 402 B SO4 402 X 4 1.15 1.30 51.3 -2.62 -0.52 27.0 77 7 6 4 3 3 0 0  SO4 402 B SO4 402 X 5 1.15 1.27 54.6 -2.55 -0.26 26.9 80 12 5 3 2 3 0 0  SO4 404 B SO4 406 X Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.