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PDBsum entry 5yeh
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Pore analysis for: 5yeh calculated with  MOLE 2.0
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PDB id
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5yeh
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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6 pores,
coloured by radius |
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6 pores,
coloured by radius
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6 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.27 |
1.64 |
26.6 |
0.30 |
0.13 |
10.5 |
74 |
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3 |
0 |
1 |
3 |
1 |
0 |
0 |
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DC 8 C DC 5 D DC 6 D DT 7 D DC 8 D DT 9 D
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2 |
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1.74 |
1.83 |
27.1 |
-1.55 |
-0.54 |
21.7 |
77 |
4 |
1 |
0 |
2 |
0 |
0 |
0 |
DG 16 C DG 17 C DT 9 D DA 10 D DG 10 E DG 20 E DC
6 F DT 7 F
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3 |
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1.60 |
1.60 |
41.8 |
-1.38 |
-0.42 |
14.5 |
82 |
3 |
1 |
3 |
2 |
2 |
0 |
0 |
DC 11 C DT 12 C DA 13 C DC 5 D DC 6 D DT 7 D DC 8
D DT 9 D DA 10 D DG 11 D DG 20 E DC 6 F DT 7 F
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4 |
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1.46 |
2.31 |
50.0 |
-1.12 |
-0.12 |
17.2 |
77 |
3 |
1 |
0 |
3 |
2 |
1 |
0 |
DT 7 C DC 19 D DG 20 D DG 20 E DC 4 F DC 5 F DC 6
F DT 7 F
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5 |
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1.25 |
1.25 |
51.5 |
-0.64 |
-0.24 |
14.7 |
81 |
4 |
0 |
2 |
4 |
1 |
0 |
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DC 8 C DG 16 C DG 17 C DT 9 D DA 10 D DG 10 E DA
15 F
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6 |
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1.60 |
1.60 |
54.1 |
-1.43 |
-0.51 |
13.3 |
85 |
4 |
0 |
3 |
2 |
2 |
0 |
0 |
DC 11 C DT 12 C DA 13 C DG 16 C DG 17 C DC 5 D DC
6 D DT 7 D DC 8 D DT 9 D DA 10 D DG 11 D DG 10 E
DA 15 F
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program