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PDBsum entry 5yeg
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Pore analysis for: 5yeg calculated with  MOLE 2.0
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PDB id
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5yeg
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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9 pores,
coloured by radius |
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9 pores,
coloured by radius
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9 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.70 |
3.70 |
28.0 |
-1.01 |
-0.68 |
13.3 |
87 |
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2 |
1 |
0 |
1 |
0 |
0 |
0 |
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DG 14 C DA 15 C DG 16 C DG 17 C DG 18 C DG 10 D
DC 11 D DT 15 E DT 16 E DA 17 E DT 3 F
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2 |
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1.23 |
1.48 |
30.2 |
-0.51 |
-0.19 |
12.7 |
81 |
3 |
0 |
2 |
4 |
1 |
0 |
0 |
DC 8 C DC 9 C DC 4 D DC 5 D DC 6 D DT 7 D DC 8 D
DT 9 D
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3 |
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1.27 |
1.46 |
44.0 |
0.02 |
-0.30 |
6.8 |
75 |
2 |
0 |
1 |
3 |
1 |
0 |
0 |
DC 8 C DC 9 C DG 17 C DG 18 C DC 8 D DT 9 D DT 15
E DT 16 E DA 17 E DT 3 F
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4 |
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1.26 |
1.47 |
54.1 |
-0.60 |
-0.49 |
11.0 |
78 |
3 |
1 |
1 |
4 |
1 |
0 |
0 |
DC 8 C DC 9 C DG 14 C DA 15 C DG 16 C DG 17 C DT
9 D DG 10 D DC 11 D DT 15 E DT 16 E DG 11 F DC 12
F
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5 |
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1.93 |
1.93 |
59.7 |
-0.99 |
-0.78 |
11.7 |
76 |
2 |
1 |
0 |
0 |
0 |
0 |
0 |
DG 17 C DG 18 C DT 15 E DT 16 E DA 17 E DA 18 E D
A 19 E DG 20 E DA 1 F DT 4 F DT 5 F DA 6 F DA 7 F
DC 8 F DC 9 F DA 10 F
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6 |
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1.34 |
1.35 |
59.9 |
-1.25 |
-0.43 |
14.7 |
79 |
4 |
1 |
0 |
2 |
3 |
1 |
0 |
DA 1 C DT 4 C DT 5 C DA 6 C DA 19 D DG 20 D DC 4
E DC 5 E DC 6 E DT 7 E
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7 |
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2.56 |
2.57 |
63.6 |
-0.86 |
-0.64 |
11.9 |
84 |
5 |
1 |
1 |
1 |
0 |
0 |
0 |
DG 17 C DG 18 C DT 15 E DT 16 E DA 17 E DA 18 E D
A 19 E DG 20 E DT 5 F DA 6 F DA 7 F DC 8 F DC 9 F
DA 10 F
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8 |
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1.80 |
1.80 |
78.9 |
-0.91 |
-0.43 |
12.2 |
74 |
2 |
1 |
1 |
3 |
2 |
1 |
0 |
DG 17 C DG 18 C DC 5 D DC 6 D DT 7 D DC 8 D DT 9
D DT 15 E DT 16 E DA 17 E DT 3 F
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9 |
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1.78 |
1.78 |
88.9 |
-1.05 |
-0.57 |
13.6 |
77 |
3 |
2 |
1 |
4 |
2 |
1 |
0 |
DG 14 C DA 15 C DG 16 C DG 17 C DC 5 D DC 6 D DT
7 D DC 8 D DT 9 D DG 10 D DC 11 D DT 15 E DT 16 E
DG 11 F DC 12 F
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program