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PDBsum entry 5yap
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Pore analysis for: 5yap calculated with  MOLE 2.0
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PDB id
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5yap
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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5 pores,
coloured by radius |
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8 pores,
coloured by radius
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8 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.30 |
1.30 |
25.3 |
-1.65 |
-0.21 |
15.4 |
70 |
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2 |
2 |
1 |
1 |
2 |
2 |
0 |
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NAI 500 D
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2 |
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1.20 |
1.50 |
85.1 |
-1.79 |
-0.20 |
22.1 |
69 |
9 |
6 |
0 |
5 |
7 |
5 |
0 |
NAI 401 C
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3 |
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1.11 |
1.67 |
91.8 |
-1.97 |
-0.44 |
25.9 |
73 |
9 |
11 |
0 |
6 |
4 |
6 |
0 |
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4 |
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1.18 |
1.36 |
93.7 |
-2.29 |
-0.40 |
29.5 |
73 |
11 |
9 |
0 |
4 |
5 |
5 |
0 |
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5 |
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1.21 |
1.42 |
95.3 |
-1.94 |
-0.32 |
24.8 |
71 |
13 |
7 |
0 |
5 |
6 |
5 |
0 |
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6 |
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1.21 |
1.38 |
98.7 |
-2.23 |
-0.34 |
27.6 |
71 |
12 |
10 |
0 |
5 |
6 |
6 |
0 |
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7 |
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1.21 |
1.31 |
115.7 |
-2.14 |
-0.29 |
26.4 |
70 |
15 |
7 |
0 |
5 |
8 |
6 |
0 |
NAI 401 C
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8 |
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1.20 |
1.52 |
117.2 |
-1.80 |
-0.23 |
23.5 |
71 |
14 |
8 |
1 |
6 |
7 |
6 |
0 |
NAI 401 A 8S0 402 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program