PDBsum entry 5y1x

Pore analysis for: 5y1x calculated with

MOLE 2.0

PDB id

5y1x

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

6 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.51

1.50

40.6

-2.38

-0.36

33.7

87

6

4

2

3

1

0

0

2

1.12

2.05

54.1

-1.52

-0.15

20.8

83

6

7

4

6

2

1

0

BB2 1103 A

3

1.14

1.90

61.8

-1.84

-0.17

24.5

82

10

5

6

4

3

0

0

BB2 1103 A GOL 1104 A

4

1.19

1.85

64.7

-2.25

-0.38

29.1

82

13

6

9

6

3

0

0

BB2 1103 A GOL 1104 A

5

1.63

1.86

70.6

-1.36

-0.22

18.1

78

11

4

8

5

5

0

0

BB2 1103 A GOL 1104 A

6

1.21

1.71

70.4

-1.35

-0.09

18.4

81

9

4

5

6

5

1

0

BB2 1103 A GOL 1104 A

7

1.14

1.95

71.3

-1.63

-0.38

21.8

81

8

8

7

8

2

1

0

BB2 1103 A

8

1.54

1.86

84.1

-1.16

-0.10

17.0

78

10

4

8

7

6

0

0

BB2 1103 A GOL 1104 A

9

1.54

1.85

87.3

-1.60

-0.24

22.4

78

14

6

11

7

6

0

0

BB2 1103 A GOL 1104 A

10

1.47

1.89

159.6

-1.46

-0.21

23.4

82

11

12

6

9

5

0

0

BB2 1103 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.