 |
PDBsum entry 5xf1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 5xf1 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5xf1
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
25 pores,
coloured by radius |
|
23 pores,
coloured by radius
|
23 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.93 |
2.07 |
30.6 |
-0.59 |
-0.16 |
12.1 |
91 |
|
2 |
2 |
5 |
5 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
1.87 |
1.87 |
34.1 |
-1.42 |
-0.65 |
13.4 |
85 |
1 |
4 |
3 |
1 |
0 |
3 |
0 |
|
|
3 |
 |
2.67 |
4.70 |
34.6 |
-0.87 |
-0.11 |
10.9 |
85 |
5 |
0 |
5 |
4 |
1 |
1 |
0 |
|
|
4 |
 |
1.40 |
2.63 |
39.0 |
-1.97 |
-0.43 |
23.4 |
81 |
7 |
1 |
2 |
1 |
1 |
0 |
1 |
97V 1209 B
|
|
5 |
 |
2.52 |
4.99 |
44.5 |
-1.67 |
-0.58 |
14.5 |
79 |
4 |
2 |
2 |
0 |
0 |
3 |
0 |
|
|
6 |
 |
2.57 |
2.70 |
46.6 |
-1.45 |
-0.50 |
21.4 |
84 |
5 |
5 |
2 |
4 |
2 |
1 |
0 |
|
|
7 |
 |
1.94 |
2.04 |
46.9 |
-0.69 |
-0.15 |
12.3 |
90 |
3 |
2 |
6 |
8 |
1 |
1 |
0 |
|
|
8 |
 |
1.33 |
1.37 |
50.3 |
0.29 |
0.09 |
7.9 |
78 |
3 |
2 |
4 |
10 |
6 |
0 |
0 |
|
|
9 |
 |
1.88 |
1.91 |
53.1 |
-1.80 |
-0.55 |
20.9 |
88 |
5 |
5 |
8 |
4 |
3 |
0 |
0 |
|
|
10 |
 |
1.38 |
2.36 |
53.6 |
-2.18 |
-0.36 |
16.6 |
71 |
5 |
1 |
3 |
0 |
4 |
0 |
0 |
NAG 1 E NAG 2 E
|
|
11 |
 |
1.45 |
1.50 |
56.9 |
-1.74 |
-0.62 |
16.5 |
94 |
4 |
4 |
11 |
4 |
0 |
0 |
0 |
|
|
12 |
|
2.51 |
3.74 |
56.8 |
-2.43 |
-0.51 |
23.4 |
83 |
6 |
3 |
3 |
1 |
2 |
0 |
0 |
NAG 1 J NAG 2 J NAG 3 J
|
|
13 |
|
1.37 |
2.58 |
57.5 |
-1.88 |
-0.42 |
24.6 |
86 |
6 |
3 |
2 |
4 |
1 |
1 |
0 |
97V 1209 B
|
|
14 |
|
1.23 |
1.46 |
60.9 |
-0.05 |
0.05 |
9.7 |
82 |
4 |
2 |
5 |
12 |
4 |
1 |
0 |
|
|
15 |
|
1.31 |
1.33 |
62.2 |
0.25 |
0.05 |
8.9 |
82 |
2 |
4 |
5 |
14 |
6 |
0 |
0 |
|
|
16 |
|
2.47 |
4.87 |
82.6 |
-1.41 |
-0.58 |
15.6 |
84 |
6 |
3 |
6 |
2 |
1 |
3 |
0 |
|
|
17 |
|
1.88 |
2.02 |
85.2 |
-2.37 |
-0.68 |
25.5 |
89 |
7 |
4 |
8 |
3 |
1 |
0 |
0 |
NAG 1 K
|
|
18 |
|
1.62 |
4.54 |
94.8 |
0.65 |
0.22 |
12.7 |
75 |
6 |
2 |
2 |
13 |
5 |
0 |
0 |
97V 1209 B
|
|
19 |
|
1.47 |
4.62 |
96.5 |
-0.12 |
0.02 |
14.8 |
79 |
8 |
2 |
3 |
9 |
2 |
0 |
0 |
97V 1209 B
|
|
20 |
|
1.38 |
4.62 |
100.7 |
-0.06 |
0.06 |
13.7 |
81 |
7 |
2 |
4 |
12 |
2 |
1 |
0 |
97V 1209 B
|
|
21 |
|
2.29 |
2.38 |
114.9 |
-1.71 |
-0.71 |
16.1 |
94 |
7 |
6 |
13 |
4 |
0 |
1 |
0 |
|
|
22 |
|
1.30 |
1.33 |
120.6 |
0.35 |
0.10 |
10.2 |
78 |
8 |
3 |
4 |
17 |
7 |
0 |
1 |
97V 1209 B
|
 |
23 |
|
1.36 |
4.32 |
127.1 |
-0.49 |
-0.16 |
15.0 |
82 |
10 |
5 |
6 |
14 |
3 |
0 |
1 |
97V 1209 B
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program