PDBsum entry 5x8r Go to PDB code:  Pore analysis for: 5x8r calculated with MOLE 2.0 PDB id 5x8r Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.85 1.85 69.0 -0.59 -0.65 7.6 67 1 0 0 0 1 0 0  C 35 a C 48 a U 49 a A 51 a A 52 a U 98 a G 99 a A 100 a U 258 a A 259 a A 324 a C 326 a G 328 a U 329 a G 330 a G 331 a U 336 a U 337 a U 338 a C 366 a A 367 a U 1361 a A 1362 a A 1428 a G 1429 a U 1430 a G 1431 a 2 1.23 1.38 82.8 -1.27 -0.23 19.0 84 7 0 0 4 2 1 0  C 24 a U 25 a C 26 a A 468 a G 469 a C 470 a A 471 a G 472 a C 473 a A 485 a U 500 a A 501 a A 858 a C 859 a U 860 a C 861 a A 862 a U 1361 a A 1362 a U 1363 a U 1430 a G 1431 a 3 1.42 1.42 133.3 -1.08 -0.73 11.6 82 6 2 3 2 0 0 0  G 388 a C 389 a C 390 a C 391 a A 392 a C 393 a U 460 a C 461 a U 462 a A 480 a G 486 a A 487 a G 488 a A 945 a U 946 a C 951 a U 955 a G 966 a A 967 a A 969 a G 970 a C 986 a G 987 a C 988 a C 994 a A 995 a G 996 a G 997 a U 1153 a G 1154 a C 1155 a C 1156 a C 1157 a 4 3.02 3.08 143.3 -1.07 -0.38 14.7 83 8 4 6 6 4 1 0  U 610 a A 611 a G 657 a G 780 a C 781 a U 782 a U 784 a G 785 a C 786 a U 788 a A 789 a A 793 a C 794 a C 795 a C 796 a G 797 a U 798 a 5 1.35 1.84 157.6 0.01 -0.20 8.6 82 4 3 5 18 2 1 0  A 617 a G 618 a A 619 a G 620 a G 621 a G 622 a A 623 a A 624 a U 625 a G 657 a G 658 a A 660 a A 661 a G 662 a G 686 a 6 1.19 2.54 164.1 -1.19 -0.50 12.2 81 10 1 7 4 2 1 0  U 955 a G 966 a A 967 a A 969 a G 970 a C 986 a G 987 a C 988 a C 1205 a G 1206 a C 1207 a G 1208 a A 1209 a C 1212 a C 1213 a G 1214 a C 1215 a G 1216 a G 1218 a G 1219 a G 1220 a U 1221 a G 1222 a U 1263 a 7 1.51 1.72 170.2 -0.34 -0.40 10.8 80 7 3 4 11 1 1 0  G 601 a G 602 a A 603 a G 604 a U 605 a A 606 a C 607 a G 609 a U 610 a G 686 a C 687 a U 688 a G 689 a G 690 a G 691 a C 692 a C 693 a G 694 a A 695 a C 696 a C 796 a G 797 a U 798 a G 799 a C 800 a 8 1.37 1.37 166.6 -0.52 -0.51 9.4 80 9 1 3 3 3 1 0  C 15 a G 16 a A 17 a U 212 a G 213 a G 257 a G 388 a C 389 a C 390 a A 392 a U 460 a C 461 a G 475 a C 476 a G 482 a A 483 a G 486 a A 487 a G 488 a A 521 a A 522 a U 833 a G 835 a G 836 a G 837 a A 838 a G 839 a A 856 a A 857 a A 858 a C 861 a A 862 a A 863 a A 864 a G 865 a A 1343 a C 1346 a C 1352 a C 1353 a U 1361 a A 1362 a U 1363 a A 1428 a G 1429 a U 1430 a G 1431 a U 1439 a G 1440 a C 1459 a 9 2.83 2.83 173.0 -0.40 -0.54 6.0 82 8 0 2 3 3 0 0  U 212 a G 213 a G 257 a A 520 a A 521 a A 522 a G 778 a C 779 a G 780 a U 788 a A 789 a C 795 a C 796 a U 806 a G 807 a C 815 a G 816 a U 833 a G 835 a G 836 a G 837 a A 838 a G 839 a A 856 a A 857 a A 858 a G 866 a A 867 a A 868 a C 1025 a G 1031 a A 1050 a U 1340 a G 1341 a U 1342 a A 1343 a U 1361 a A 1362 a U 1363 a A 1428 a G 1429 a U 1430 a G 1431 a C 1458 a C 1459 a G 1478 a G 1479 a A 1480 a C 1484 a C 1485 a U 1486 a 10 1.27 2.83 174.8 -0.68 -0.45 9.6 76 10 1 3 4 5 0 0  U 212 a G 213 a G 257 a A 520 a A 521 a A 522 a G 807 a U 808 a A 809 a C 815 a G 816 a U 833 a G 835 a G 836 a G 837 a A 838 a G 839 a A 856 a A 857 a A 858 a G 866 a A 867 a A 868 a C 1025 a G 1026 a G 1031 a A 1050 a U 1340 a G 1341 a U 1342 a A 1343 a U 1361 a A 1362 a U 1363 a A 1428 a G 1429 a U 1430 a G 1431 a C 1458 a C 1459 a G 1478 a G 1479 a A 1480 a C 1484 a C 1485 a U 1486 a 11 2.06 2.06 179.0 -0.35 -0.53 5.9 81 5 1 3 4 3 0 0  U 212 a G 213 a A 214 a U 215 a A 217 a G 218 a A 250 a G 252 a G 257 a C 616 a A 617 a G 618 a A 619 a G 620 a G 621 a G 622 a A 623 a A 624 a U 625 a G 657 a G 658 a A 660 a A 661 a G 662 a A 663 a A 664 a C 680 a A 681 a C 682 a G 708 a A 709 a G 710 a A 711 a C 712 a G 713 a A 714 a A 715 a C 754 a U 755 a A 756 a G 757 a C 758 a C 759 a G 760 a C 831 a U 845 a C 846 a G 847 a U 854 a G 855 a A 856 a A 857 a A 858 a A 1362 a U 1363 a A 1428 a G 1429 a U 1430 a G 1431 a 12 2.11 2.18 189.0 -0.95 -0.72 10.9 84 7 3 3 2 1 0 0  A 51 a C 53 a A 100 a G 101 a U 102 a A 103 a G 106 a C 134 a C 147 a G 148 a G 149 a C 150 a C 160 a C 161 a C 162 a U 258 a C 285 a A 286 a C 287 a G 289 a G 290 a G 291 a A 300 a C 304 a C 305 a C 306 a A 307 a G 308 a G 319 a A 320 a G 321 a G 322 a U 1361 a A 1362 a G 1372 a C 1373 a C 1374 a A 1375 a A 1395 a A 1396 a C 1397 a C 1398 a G 1404 a A 1405 a G 1406 a G 1407 a G 1408 a G 1409 a G 1410 a A 1428 a G 1429 a U 1430 a G 1431 a 13 1.38 1.38 195.3 -0.90 -0.52 12.6 80 11 2 5 7 4 2 0  G 388 a C 389 a C 390 a A 392 a U 460 a C 461 a C 476 a G 482 a A 483 a G 486 a A 487 a G 488 a A 624 a U 625 a U 626 a G 639 a U 640 a G 641 a A 654 a U 655 a C 656 a G 657 a C 873 a G 874 a G 875 a G 877 a C 879 a U 1142 a C 1143 a A 1144 a C 1331 a C 1332 a C 1333 a G 1334 a G 1335 a C 1346 a A 1347 a C 1348 a C 1349 a A 1452 a 14 1.75 1.74 199.0 -1.03 -0.58 12.0 80 9 4 5 5 5 0 0  A 9 a G 10 a G 28 a G 29 a A 30 a U 31 a A 33 a A 34 a C 35 a G 36 a G 39 a A 367 a U 369 a G 370 a C 391 a A 392 a C 393 a G 454 a C 455 a U 456 a U 460 a C 461 a U 462 a A 480 a G 482 a G 492 a C 493 a C 497 a G 498 a A 945 a U 946 a C 951 a U 955 a G 966 a A 967 a A 969 a G 970 a C 986 a G 987 a C 988 a C 994 a A 995 a G 996 a G 997 a U 1153 a G 1154 a C 1155 a C 1156 a C 1157 a 15 1.30 1.26 222.1 -1.06 -0.48 16.4 81 14 8 6 13 2 1 0  C 391 a A 392 a C 393 a U 460 a C 461 a U 462 a A 480 a A 945 a U 946 a C 951 a U 955 a G 966 a A 967 a A 969 a G 970 a C 986 a G 987 a C 988 a C 994 a A 995 a G 996 a G 997 a U 1153 a G 1154 a C 1155 a C 1156 a C 1157 a 16 1.60 1.60 228.8 -0.56 -0.64 6.5 85 5 0 2 5 2 0 0  A 103 a G 106 a U 117 a G 124 a A 165 a G 166 a G 167 a A 177 a C 194 a G 195 a A 196 a C 204 a U 216 a A 217 a G 218 a C 219 a U 220 a A 221 a U 223 a U 232 a A 233 a A 234 a A 236 a C 238 a U 239 a C 255 a G 290 a G 291 a C 293 a U 294 a G 295 a A 296 a G 297 a A 298 a C 299 a C 616 a A 617 a G 618 a A 619 a G 620 a G 621 a G 622 a A 623 a A 624 a U 625 a G 657 a G 658 a A 660 a A 661 a G 662 a A 663 a A 664 a C 680 a A 681 a C 682 a A 709 a G 710 a A 711 a C 712 a G 713 a A 714 a A 715 a C 754 a U 755 a A 756 a G 757 a C 758 a C 759 a G 760 a U 844 a U 845 a C 846 a G 847 a A 1375 a U 1376 a G 1425 a 17 1.16 2.37 227.5 -1.42 -0.63 14.6 83 14 4 10 5 2 1 1  G 388 a C 389 a C 390 a C 391 a A 392 a C 393 a U 460 a C 461 a U 462 a A 480 a G 486 a A 487 a G 488 a A 945 a U 946 a C 986 a C 994 a A 995 a G 996 a G 997 a U 1153 a G 1154 a C 1155 a C 1156 a C 1157 a C 1205 a G 1206 a C 1207 a G 1208 a A 1209 a C 1212 a C 1213 a G 1214 a C 1215 a G 1216 a G 1218 a G 1219 a G 1220 a U 1221 a G 1222 a U 1263 a 18 1.55 2.88 227.3 -1.34 -0.44 19.6 79 20 11 8 12 4 0 0  C 391 a A 392 a C 393 a U 460 a C 461 a U 462 a A 480 a A 945 a U 946 a C 951 a U 955 a G 966 a A 967 a A 969 a G 970 a C 986 a G 987 a C 988 a C 994 a A 995 a G 996 a G 997 a G 1021 a U 1022 a G 1023 a U 1153 a G 1154 a C 1155 a C 1156 a C 1157 a 19 1.24 2.59 246.0 -1.25 -0.54 13.9 82 18 2 5 7 3 3 0  A 624 a U 625 a U 626 a G 639 a U 640 a G 641 a A 654 a U 655 a C 656 a G 657 a G 875 a G 877 a A 886 a A 887 a G 890 a G 891 a C 1185 a G 1190 a C 1191 a C 1192 a G 1193 a G 1194 a C 1213 a G 1214 a C 1215 a A 1237 a C 1238 a C 1239 a C 1284 a G 1285 a A 1288 a U 1289 a C 1290 a U 1299 a C 1300 a C 1331 a C 1332 a A 1452 a 20 1.22 2.65 254.7 -1.25 -0.44 14.9 79 18 4 8 9 5 3 0  G 1021 a U 1022 a G 1023 a A 1054 a G 1055 a A 1059 a A 1060 a C 1061 a C 1062 a C 1063 a U 1064 a C 1065 a C 1077 a G 1099 a A 1101 a C 1102 a A 1103 a G 1104 a G 1194 a G 1195 a A 1196 a C 1197 a A 1198 a A 1199 a A 1200 a G 1201 a C 1215 a A 1228 a C 1229 a C 1230 a A 1234 a A 1235 a 21 1.21 1.21 252.0 -0.45 -0.68 4.8 83 2 1 2 4 2 0 0  G 70 a G 71 a A 72 a A 85 a G 86 a U 102 a A 103 a G 106 a A 136 a C 137 a A 138 a G 143 a C 147 a G 148 a C 153 a U 216 a A 217 a G 218 a C 219 a U 220 a A 221 a U 223 a C 255 a C 285 a A 286 a C 287 a G 290 a G 291 a A 300 a C 304 a C 305 a C 306 a A 320 a G 321 a G 322 a C 616 a A 617 a G 618 a A 619 a G 620 a G 621 a G 622 a A 623 a A 624 a U 625 a G 657 a G 658 a A 660 a A 661 a G 662 a A 663 a A 664 a C 680 a A 681 a C 682 a A 709 a G 710 a A 711 a C 712 a G 713 a A 714 a A 715 a C 754 a U 755 a A 756 a G 757 a C 758 a C 759 a G 760 a U 844 a U 845 a C 846 a G 847 a A 1375 a U 1376 a G 1425 a 22 1.47 1.56 261.5 -0.55 -0.51 9.7 78 9 2 3 13 2 2 0  U 6 a G 7 a A 30 a U 31 a A 33 a A 34 a C 35 a G 36 a G 39 a C 266 a C 267 a G 268 a G 270 a A 271 a A 367 a U 369 a G 370 a C 371 a C 372 a C 497 a G 498 a U 513 a G 515 a G 516 a C 517 a C 559 a C 560 a C 571 a C 578 a A 579 a G 602 a A 603 a G 604 a U 605 a A 606 a C 607 a G 609 a U 610 a G 618 a G 686 a C 687 a U 688 a G 689 a G 690 a G 691 a C 692 a C 693 a G 694 a A 695 a G 770 a A 771 a U 772 a A 773 a C 774 a A 801 a G 802 a U 820 a A 821 a A 822 a G 823 a U 824 a A 825 a U 826 a C 827 a 23 2.87 2.87 258.7 -0.79 -0.57 11.3 78 14 4 2 5 4 1 0  C 15 a G 16 a A 17 a U 212 a G 213 a G 257 a C 391 a A 392 a C 393 a U 460 a C 461 a U 462 a G 475 a C 476 a A 480 a G 482 a A 483 a A 521 a A 522 a U 833 a G 835 a G 836 a G 837 a A 838 a G 839 a A 856 a A 857 a A 858 a C 861 a A 862 a A 863 a A 864 a G 865 a A 945 a U 946 a C 951 a U 955 a G 966 a A 967 a A 969 a G 970 a C 986 a G 987 a C 988 a C 994 a A 995 a G 996 a G 997 a U 1153 a G 1154 a C 1155 a C 1156 a C 1157 a A 1343 a C 1346 a C 1352 a C 1353 a A 1362 a U 1363 a A 1428 a G 1429 a U 1430 a G 1431 a U 1439 a G 1440 a C 1459 a 24 2.52 2.58 274.8 -1.03 -0.56 13.2 78 16 4 4 9 5 2 0  C 391 a A 392 a C 393 a U 460 a C 461 a U 462 a C 476 a A 480 a G 482 a A 483 a A 624 a U 625 a U 626 a G 639 a U 640 a G 641 a A 654 a U 655 a C 656 a G 657 a C 873 a G 874 a G 875 a G 877 a C 879 a A 945 a U 946 a U 955 a G 966 a A 967 a A 969 a G 970 a C 986 a G 987 a C 988 a C 994 a A 995 a G 996 a G 997 a U 1142 a C 1143 a A 1144 a U 1153 a G 1154 a C 1155 a C 1156 a C 1157 a C 1331 a C 1332 a C 1333 a G 1334 a G 1335 a C 1346 a A 1347 a C 1348 a C 1349 a A 1452 a 25 1.97 1.97 288.6 -0.76 -0.68 8.2 84 7 3 5 5 2 0 0  U 102 a A 103 a G 106 a C 134 a C 147 a G 148 a G 149 a C 150 a C 160 a C 161 a C 162 a U 216 a A 217 a G 218 a C 219 a U 220 a A 221 a U 223 a C 255 a C 285 a A 286 a C 287 a G 290 a G 291 a A 300 a C 304 a C 305 a C 306 a A 307 a G 308 a G 319 a A 320 a G 321 a G 322 a C 616 a A 617 a G 618 a A 619 a G 620 a G 621 a G 622 a A 623 a A 624 a U 625 a G 657 a G 658 a A 660 a A 661 a G 662 a A 663 a A 664 a C 680 a A 681 a C 682 a A 709 a G 710 a A 711 a C 712 a G 713 a A 714 a A 715 a C 754 a U 755 a A 756 a G 757 a C 758 a C 759 a G 760 a U 844 a U 845 a C 846 a G 847 a A 1375 a U 1376 a A 1395 a A 1396 a C 1397 a C 1398 a G 1404 a A 1405 a G 1406 a G 1407 a G 1408 a G 1409 a G 1410 a G 1425 a 26 1.24 1.23 304.3 -0.52 -0.39 10.6 79 12 5 8 21 4 4 0  U 3 a A 5 a U 6 a G 270 a A 271 a U 513 a G 515 a G 516 a C 517 a C 560 a C 561 a A 562 a G 563 a C 578 a A 579 a G 602 a A 603 a G 604 a U 605 a A 606 a C 607 a G 609 a U 610 a G 686 a C 687 a U 688 a G 689 a G 690 a G 691 a C 692 a C 693 a G 694 a A 695 a G 770 a A 771 a U 772 a A 773 a C 774 a A 801 a G 802 a U 820 a A 821 a A 822 a G 823 a U 824 a A 825 a U 826 a C 827 a 27 1.40 1.40 306.9 -0.47 -0.54 9.2 79 9 4 6 13 3 2 0  C 15 a G 16 a A 17 a G 388 a C 389 a C 390 a A 392 a U 460 a C 461 a G 475 a C 476 a G 482 a A 483 a G 486 a A 487 a G 488 a A 520 a A 603 a G 604 a U 605 a A 606 a C 607 a G 609 a U 610 a G 672 a C 674 a G 675 a A 676 a A 677 a G 686 a C 687 a U 688 a G 689 a G 690 a G 691 a C 692 a C 693 a G 766 a G 770 a A 771 a U 772 a A 801 a G 802 a U 803 a G 804 a U 805 a U 806 a C 815 a G 816 a G 835 a G 836 a C 861 a A 862 a A 863 a A 864 a G 865 a G 866 a A 867 a A 868 a G 1341 a U 1342 a A 1343 a C 1346 a C 1352 a C 1353 a U 1439 a G 1440 a C 1458 a C 1459 a U 1477 a G 1478 a G 1479 a A 1480 a C 1484 a 28 1.35 1.50 314.7 -0.40 -0.50 8.4 79 8 3 4 16 2 2 0  U 6 a G 112 a A 113 a C 115 a C 116 a G 124 a A 165 a G 166 a G 167 a C 168 a A 177 a C 194 a G 195 a A 196 a G 197 a G 198 a A 199 a G 200 a G 264 a G 268 a G 270 a A 271 a U 513 a G 515 a G 516 a C 517 a G 552 a U 553 a C 554 a A 555 a A 556 a U 558 a C 559 a G 576 a A 577 a C 578 a A 579 a G 602 a A 603 a G 604 a U 605 a A 606 a C 607 a G 609 a U 610 a G 686 a C 687 a U 688 a G 689 a G 690 a G 691 a C 692 a C 693 a G 694 a A 695 a G 770 a A 771 a U 772 a A 773 a C 774 a A 801 a G 802 a U 820 a A 821 a A 822 a G 823 a U 824 a A 825 a U 826 a C 827 a 29 2.83 2.83 296.6 -0.96 -0.61 11.3 79 15 3 4 6 5 1 0  C 15 a G 16 a A 17 a C 391 a A 392 a C 393 a U 460 a C 461 a U 462 a G 475 a C 476 a A 480 a G 482 a A 483 a A 520 a G 778 a C 779 a G 780 a U 788 a A 789 a C 795 a C 796 a U 806 a G 807 a C 815 a G 816 a G 835 a G 836 a C 861 a A 862 a A 863 a A 864 a G 865 a G 866 a A 867 a A 868 a A 945 a U 946 a C 951 a U 955 a G 966 a A 967 a A 969 a G 970 a C 986 a G 987 a C 988 a C 994 a A 995 a G 996 a G 997 a C 1025 a G 1031 a A 1050 a U 1153 a G 1154 a C 1155 a C 1156 a C 1157 a U 1340 a G 1341 a U 1342 a A 1343 a C 1346 a C 1352 a C 1353 a U 1439 a G 1440 a C 1458 a C 1459 a G 1478 a G 1479 a A 1480 a C 1484 a C 1485 a U 1486 a 30 1.26 1.38 350.3 -0.84 -0.49 12.3 82 12 6 6 14 3 3 0  U 6 a G 112 a A 113 a C 115 a C 116 a C 168 a U 169 a G 170 a A 171 a G 172 a A 173 a G 197 a G 198 a A 199 a G 200 a G 228 a A 229 a U 235 a A 236 a G 264 a G 268 a G 270 a A 271 a U 513 a G 515 a G 516 a C 517 a G 552 a U 553 a C 554 a A 555 a A 556 a U 558 a C 559 a G 576 a A 577 a C 578 a A 579 a U 610 a A 611 a G 657 a G 770 a A 771 a U 772 a A 773 a C 774 a U 775 a G 777 a G 778 a C 779 a G 780 a C 781 a U 782 a U 784 a G 785 a C 786 a A 793 a C 794 a C 795 a G 797 a U 798 a G 799 a C 800 a A 801 a U 819 a U 820 a A 821 a A 822 a G 823 a U 824 a A 825 a U 826 a C 827 a Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.