PDBsum entry 5w3l Go to PDB code:  Tunnel analysis for: 5w3l calculated with MOLE 2.0 PDB id 5w3l Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.52 1.97 15.3 -1.54 -0.24 16.3 91 3 1 3 3 1 0 0   2 1.34 1.74 36.1 -0.72 -0.21 8.8 86 5 1 4 6 3 0 0   3 1.32 1.32 16.7 -1.30 -0.16 18.1 85 2 1 2 2 2 0 0   4 1.25 1.48 15.3 -1.22 -0.18 14.9 80 2 2 1 2 1 0 0   5 1.13 1.13 16.2 -1.92 -0.56 21.2 71 2 3 0 0 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.