PDBsum entry 5vvc Go to PDB code:  Tunnel analysis for: 5vvc calculated with MOLE 2.0 PDB id 5vvc Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.40 37.0 -0.44 -0.05 10.2 76 4 3 4 4 5 1 0  HEM 501 B H4B 502 B 9OJ 503 B 2 1.17 1.39 39.0 0.46 0.02 6.5 73 1 1 2 6 4 1 1  HEM 501 B H4B 502 B 9OJ 503 B 3 1.13 1.36 43.4 -0.81 -0.10 13.3 76 5 3 4 4 5 1 0  HEM 501 A H4B 502 A 9OJ 503 A 4 1.55 2.32 18.0 -0.76 -0.15 20.4 82 1 2 2 4 1 0 0  BTB 504 B GD 507 B 5 1.54 2.31 28.5 -1.37 -0.26 21.2 80 3 2 4 5 1 1 0   6 1.26 1.26 17.9 -1.95 -0.94 10.3 87 0 2 6 0 0 1 0   7 1.82 1.86 15.2 -0.09 -0.31 7.5 90 0 2 3 5 0 0 0   8 1.14 1.14 16.1 0.13 -0.24 6.2 64 0 1 0 4 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.