PDBsum entry 5vt8 Go to PDB code:  Tunnel analysis for: 5vt8 calculated with MOLE 2.0 PDB id 5vt8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 3.28 18.2 3.21 1.08 1.8 78 2 0 1 9 2 0 0   2 1.17 3.28 19.8 3.31 1.05 1.4 84 2 0 1 8 1 0 0   3 1.18 3.29 30.7 0.88 0.15 8.9 77 3 1 2 10 2 2 0   4 1.16 3.28 32.3 0.77 0.09 9.3 81 3 1 2 9 1 2 0   5 1.19 1.19 21.3 0.32 0.04 2.2 71 0 1 4 5 4 1 0   6 1.19 1.37 105.3 -0.51 -0.16 12.0 82 6 9 10 13 5 4 0   7 1.30 2.86 16.4 1.75 0.77 5.2 81 0 2 0 9 2 0 0   8 1.18 2.43 22.0 2.87 1.17 0.6 74 0 1 1 9 3 1 0   9 1.18 2.43 24.3 2.32 0.95 3.2 75 0 2 0 12 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.