PDBsum entry 5vex Go to PDB code:  Tunnel analysis for: 5vex calculated with MOLE 2.0 PDB id 5vex Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.41 1.41 26.6 -0.89 -0.21 21.0 61 2 3 0 5 4 0 0   2 1.41 1.42 37.2 -1.19 -0.18 23.1 70 4 2 2 5 4 0 1   3 1.22 1.44 30.9 0.73 0.42 5.8 76 1 1 2 6 4 0 0   4 1.20 1.80 31.9 0.58 0.37 7.0 76 1 1 2 6 4 0 0   5 1.22 1.43 31.9 -0.39 0.10 14.8 72 2 4 3 6 3 0 0   6 1.21 1.77 33.0 -0.27 0.10 15.6 72 2 4 3 6 3 0 0   7 1.24 1.43 42.6 -0.32 0.18 14.6 69 3 3 2 6 4 0 0   8 1.17 1.27 15.4 1.24 0.42 7.9 75 3 0 1 4 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.