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PDBsum entry 5v2c
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Top Page protein ligands metals Protein-protein interface(s) links
Electron transport, photosynthesis PDB id
5v2c
Contents
Protein chains
334 a.a.
504 a.a.
451 a.a.
342 a.a.
81 a.a.
34 a.a.
65 a.a.
38 a.a.
39 a.a.
37 a.a.
37 a.a.
34 a.a.
245 a.a.
30 a.a.
97 a.a.
137 a.a.
29 a.a.
40 a.a.
62 a.a.
32 a.a.
35 a.a.
Ligands
OEX ×2
BCT ×3
CLA ×70
PHO ×4
BCR ×22
PL9 ×4
SQD ×11
LMG ×14
GOL ×60
LMT ×18
LHG
PG4
PGE
P6G
EDO ×22
HTG ×24
1PE ×7
DGD ×10
HEM ×2
HEC ×2
2PE
PE8
Metals
FE2 ×2
_CL
_CA
_MG
Waters ×3789
procheck   Generate full PROCHECK analyses

PROCHECK summary for 5v2c

Ramachandran plot

PROCHECK statistics

1. Ramachandran Plot statistics


                                         No. of
                                        residues     %-tage
                                         ------      ------
Most favoured regions      [A,B,L]         4090       92.3%          
Additional allowed regions [a,b,l,p]        330        7.4%          
Generously allowed regions [~a,~b,~l,~p]      8        0.2%          
Disallowed regions         [XX]               5        0.1%*  
                                           ----      ------
Non-glycine and non-proline residues       4433      100.0%

End-residues (excl. Gly and Pro)             71

Glycine residues                            502
Proline residues                            274
                                           ----
Total number of residues                   5280

Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good quality model would be expected to have over 90% in the most favoured regions [A,B,L].

2. G-Factors

                                                Average
Parameter                            Score       Score
---------                            -----       -----
Dihedral angles:-
     Phi-psi distribution             0.10      
     Chi1-chi2 distribution           0.11      
     Chi1 only                        0.19      
     Chi3 & chi4                      0.54      
     Omega                           -0.47      
                                                  -0.04      
                                                  =====
Main-chain covalent forces:-
     Main-chain bond lengths          0.17      
     Main-chain bond angles           0.25      
                                                   0.22      
                                                  =====

     OVERALL AVERAGE                               0.06      
                                                  =====

G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is. 

Values below -0.5*  - unusual
Values below -1.0** - highly unusual
Important note: The main-chain bond-lengths and bond angles are compared with the Engh & Huber (1991) ideal values derived from small-molecule data. Therefore, structures refined using different restraints may show apparently large deviations from normality.

 

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