PDBsum entry 5upd Go to PDB code:  Pore analysis for: 5upd calculated with MOLE 2.0 PDB id 5upd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.70 2.01 25.7 -0.18 -0.12 2.9 81 2 0 3 5 3 0 0  SAM 1301 A 2 1.40 1.59 32.5 -1.26 -0.37 12.3 65 3 1 2 4 4 1 1  UNX 1318 A 3 1.17 1.59 44.8 -0.13 -0.06 11.3 83 5 2 2 6 1 4 1  UNX 1313 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.