PDBsum entry 5udf Go to PDB code:  Pore analysis for: 5udf calculated with MOLE 2.0 PDB id 5udf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   26 pores, coloured by radius 26 pores, coloured by radius 26 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.78 2.78 32.4 0.40 0.13 7.5 79 0 1 2 7 2 2 0   2 1.31 2.78 34.9 -0.15 -0.11 9.7 83 1 2 4 7 1 2 0   3 3.99 4.23 35.3 -0.69 -0.23 4.5 77 1 1 3 3 2 2 0   4 1.28 2.88 39.4 -0.55 -0.04 8.4 79 2 2 4 5 3 3 0   5 1.33 3.01 39.5 -0.34 -0.10 12.9 83 2 3 3 8 1 2 0   6 1.28 2.85 39.8 -0.01 -0.08 9.9 81 2 3 4 7 1 3 0   7 3.75 3.80 43.9 -0.92 -0.33 4.0 80 1 1 4 5 3 2 0   8 1.32 2.99 45.9 -1.13 -0.19 8.9 80 2 2 4 3 4 2 0   9 1.84 2.12 46.1 -0.51 -0.19 4.6 79 0 1 5 7 2 5 0   10 1.83 2.07 54.2 -0.34 -0.34 6.3 83 1 2 5 8 1 3 0   11 2.52 2.74 57.2 -0.65 -0.49 7.2 83 2 2 6 5 1 2 0   12 2.50 3.01 58.6 -0.44 -0.26 3.1 82 0 1 6 11 2 4 0   13 1.29 2.90 59.4 -0.99 -0.33 9.1 82 3 3 5 7 2 3 0   14 1.24 3.59 60.3 -0.72 -0.33 7.4 79 2 3 4 6 2 4 0   15 1.32 2.08 62.5 -0.87 -0.34 4.9 82 1 1 7 9 3 3 0   16 1.33 3.04 62.6 -1.09 -0.41 10.1 84 3 3 6 4 3 1 0   17 2.50 3.05 64.7 -0.11 -0.34 6.4 86 1 2 5 10 0 2 0   18 2.50 2.93 66.6 -0.14 -0.35 4.9 84 1 2 8 11 0 4 0   19 1.83 2.06 67.0 -0.56 -0.40 6.4 84 1 2 7 10 1 4 0   20 1.32 2.04 68.6 -0.52 -0.38 8.0 86 2 2 6 8 1 1 0   21 1.25 2.78 70.5 -0.89 -0.30 5.7 80 2 2 7 9 3 5 0   22 1.31 2.77 70.4 -0.55 -0.40 6.3 84 2 2 9 9 1 3 0   23 1.23 3.61 73.4 -0.53 -0.28 7.1 83 2 3 7 10 1 5 0   24 1.23 3.43 76.1 -0.57 -0.34 6.9 81 3 3 8 9 1 5 0   25 1.27 3.36 77.3 -0.86 -0.33 8.4 83 3 3 8 8 2 4 0   26 1.32 3.05 78.0 -1.27 -0.46 9.5 83 3 3 9 6 4 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.