PDBsum entry 5u3v Go to PDB code:  Tunnel analysis for: 5u3v calculated with MOLE 2.0 PDB id 5u3v Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.46 3.43 27.4 0.98 0.53 4.1 73 2 0 3 6 3 0 1  7TY 502 A 2 1.62 2.16 35.4 0.78 0.37 10.2 72 4 1 1 6 4 0 1  CME 251 A 7TY 502 A 3 1.25 1.25 39.1 -0.10 -0.09 10.6 82 2 1 2 6 2 0 0  CME 251 A PGO 505 A 4 1.28 1.49 40.3 0.11 0.04 10.0 77 2 1 2 7 3 0 0  CME 251 A PGO 505 A 5 1.56 1.82 41.5 0.67 0.31 8.7 73 4 0 2 7 4 2 1  CME 251 A 7TY 502 A 6 1.26 1.26 55.0 0.66 0.23 4.9 76 4 0 4 10 5 0 1  7TY 502 A PGO 505 A 7 1.30 1.31 56.3 0.81 0.30 4.3 75 4 0 4 11 5 0 1  7TY 502 A PGO 505 A 8 1.21 1.28 35.7 1.27 0.25 3.8 85 1 2 2 10 2 0 1  PGO 501 B 7TY 502 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.