PDBsum entry 5u3f Go to PDB code:  Tunnel analysis for: 5u3f calculated with MOLE 2.0 PDB id 5u3f Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.52 16.2 -0.80 -0.28 13.2 75 2 1 0 2 1 0 0   2 1.18 1.52 17.8 -1.15 -0.27 17.8 70 2 2 0 2 1 0 0   3 1.10 1.10 17.8 -1.58 -0.69 17.1 91 2 2 2 3 0 1 0   4 1.12 1.12 20.2 -1.78 -0.61 20.4 81 2 3 2 3 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.