PDBsum entry 5u1d Go to PDB code:  Pore analysis for: 5u1d calculated with MOLE 2.0 PDB id 5u1d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   18 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.96 2.33 26.9 2.12 0.67 5.7 86 1 0 3 12 0 0 1   2 1.42 1.58 41.5 1.47 0.58 4.1 75 1 0 3 11 3 0 0   3 2.24 3.15 41.7 -1.25 -0.80 9.5 87 1 5 4 1 0 0 0   4 1.43 1.59 45.7 1.45 0.64 3.9 75 1 0 3 11 3 0 0   5 1.42 1.59 49.9 1.32 0.51 6.3 76 2 1 3 16 3 0 0   6 1.25 1.51 53.8 1.29 0.41 4.5 75 3 0 3 11 4 0 0   7 1.33 1.72 59.0 -0.86 -0.24 12.0 86 2 2 3 5 1 0 0   8 1.70 1.79 84.0 -0.28 0.00 11.6 78 6 0 7 11 3 3 0   9 1.29 1.47 149.1 -0.88 -0.01 21.2 80 14 7 8 19 3 1 1   10 1.31 1.44 156.1 -1.21 -0.18 20.2 84 15 8 12 18 4 1 2   11 1.31 1.43 162.3 -0.97 -0.11 18.3 81 15 8 12 20 4 1 1   12 1.52 1.59 157.2 -1.30 -0.42 19.5 82 9 10 12 17 4 3 1   13 1.32 1.43 183.8 -0.99 -0.26 20.5 87 12 11 12 16 1 0 1   14 1.65 3.60 183.2 -0.76 -0.22 15.7 82 11 10 14 24 3 4 0   15 1.54 1.60 185.0 -0.80 -0.34 15.9 82 8 9 13 23 3 3 0   16 1.80 1.79 194.9 -1.51 -0.43 18.7 84 13 9 17 18 3 4 1   17 1.32 1.43 226.1 -1.23 -0.44 19.9 83 16 12 14 18 2 1 2   18 1.35 2.85 257.4 -0.63 -0.14 16.6 80 12 5 10 18 2 1 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.